Authors: Jan Slifka or Egon Willighagen
This training gives an overview and explains what is the purpose of smart data management plans as living documents, core ideas behind Data Stewardship Wizard, and how to use it in practice. Furthermore, it shows the versability of DSW, its top-notch features that make...
Scientific topics: Data management
Keywords: DMP, DMP tools, data stewardship, FAIR, FAIR data
Resource type: Presentation
Data Stewardship Wizard brings together data stewards and researchers to efficiently compose data management plans (DMPs) for their research projects. Data stewards capture their knowledge and expertise in so-called knowledge models that are turned into smart...
Scientific topics: Data governance, Data management
Keywords: Data managment plan, data stewardship, data management, software tools
Resource type: Video, Slides, Webinar
Data Stewardship Wizard brings together data stewards and researchers to allow managing data in projects efficiently and in a FAIR manner. Data stewards can easily capture the knowledge including required project data and decisions in knowledge models that are then turned into...
Scientific topics: Data management, Data governance
Keywords: Data management plan, data stewardship, FAIR, data management, software tools
Resource type: Video, Webinar, Slides
This tutorial describes how to use the BridgeDbR package for identifier mapping.
Keywords: ELIXIR RIR, BridgeDb
Workshop of 1.5h where the eNanoMapper ontology and a few uses are discussed. The exercises walk the audience trough the principles, uses, and demonstrates how they can actively work with the ontology.
Scientific topics: Ontology and terminology, Toxicology
Resource type: Tutorial
This tutorial describes how terms can be added to the eNanoMapper ontology.
Keywords: enanomapper, ontologies
Resource type: Tutorial
Book that describes the cheminformatics functionality of the Chemistry Development Kit taking advantage of the Groovy programming language.
Scientific topics: Chemistry, Cheminformatics
Resource type: Book
This tutorial how to statistically analyze microarray data with ArrayAnalysis.org website.
Keywords: ArrayAnalysis.org, microarray
This tutorial describes how nanomaterial data can be added to an eNanoMapper server using a RDF format.
Scientific topics: Database management, Toxicology
Keywords: nanotoxicology, enanomapper, resource description framework, ontology
Resource type: Tutorial
This is a OER around a six day course on using JavaScript to program the life sciences web, but with a focus on the Open PHACTS API.
Scientific topics: Pharmacology, Drug discovery
Tutorial describing how a BridgeDb Identifier Mapping Database (IMS) service can be started and used for gene-variant mapping. It explains how to download the IMS Docker and identifier mapping databases (link sets), load the link sets, and test the web interface.
Scientific topics: Genomics, Genetic variation
Keywords: ELIXIR RIR, BridgeDb
Resource type: Tutorial
Training material from the denBI-organized Metabolomics Winterschool 2018, discussing identifier mapping and pathway analysis.
Scientific topics: Metabolomics
Keywords: Metabolomics, Identifiers, ELIXIR RIR, BridgeDb
Resource type: Tutorial
BridgeDb is a combination of an application programming interface (API), library, and set of data files for mapping identifiers for identical objects [1]. Identifier mapping databases are available for gene products and metabolites. This Bioconductor Vignette explains how to use BridgeDb in the R...
Keywords: ELIXIR RIR, BridgeDb
Resource type: Tutorial, Vignette
Tutorial that covers various aspects of working with the eNanoMapper database. It discussed searching, adding, and downloading data from an eNanoMapper database.
Keywords: ontologies, enanomapper
This tutorial describes how terms can be added to the eNanoMapper ontology.
Keywords: enanomapper, ontologies
This tutorial explains how the eNanoMapper ontology can be browsed with three tools, of which two are online.
Keywords: nanotoxicology, Ontologies, BioPortal, AberOWL, Protégé
Resource type: Tutorial