Register training material
9 materials found

Authors: Jan Slifka  or Christopher Barnett 


Hands-on for 'Galaxy 101 for everyone' tutorial

The questions this addresses are:
- What are the differences between the Iris species?

The objectives are:
- Familiarize yourself with the basics of Galaxy
- Learn how to obtain data from external sources
- Learn how to tag datasets
- Learn how to run tools
- Learn how histories work
-...

Keywords: introduction

Resource type: hands-on tutorial

Hands-on for 'Analysis of molecular dynamics simulations' tutorial

The questions this addresses are:
- Which analysis tools are available?

The objectives are:
- Learn which analysis tools are available.
- Analyse a protein and discuss the meaning behind each analysis.

Keywords: computational-chemistry

Resource type: hands-on tutorial

Hands-on for 'High Throughput Molecular Dynamics and Analysis' tutorial

The questions this addresses are:
- How are protein-ligand systems parameterized for molecular dynamics simulation?
- What kind of analysis can be carried out on molecular trajectories?
- How can high-throughput MD be used to study multiple ligands?

The objectives are:
- Learn about...

Keywords: computational-chemistry

Resource type: hands-on tutorial

Hands-on for 'Running molecular dynamics simulations using NAMD' tutorial

The questions this addresses are:
- How do I use the NAMD engine in Galaxy?
- What is the correct procedure for performing a simple molecular dynamics simulation of a protein?

The objectives are:
- Learn about the NAMD engine provided in BRIDGE

Keywords: computational-chemistry

Resource type: hands-on tutorial

Hands-on for 'Setting up molecular systems' tutorial

The questions this addresses are:
- How to get started modelling a protein and a ligand?

The objectives are:
- learn about the Protein Data Bank
- learn how to set up up a model protein and ligand system (with CHARMM-GUI)
- learn how to upload the system to Galaxy

Keywords: computational-chemistry

Resource type: hands-on tutorial

Introduction to 'Introduction to Galaxy Analyses'

Slides for Introduction to Galaxy Analyses

Resource type: slides

DS Wizard and its Use

This training gives an overview and explains what is the purpose of smart data management plans as living documents, core ideas behind Data Stewardship Wizard, and how to use it in practice. Furthermore, it shows the versability of DSW, its top-notch features that make...

Scientific topics: Data management

Keywords: DMP, DMP tools, data stewardship, FAIR, FAIR data

Resource type: Presentation

A Gentle Introduction to DSW for Convergers

Data Stewardship Wizard brings together data stewards and researchers to efficiently compose data management plans (DMPs) for their research projects. Data stewards capture their knowledge and expertise in so-called knowledge models that are turned into smart...

Scientific topics: Data management, Data governance

Keywords: Data managment plan, data stewardship, data management, software tools

Resource type: Video, Slides, Webinar

Data Stewardship Wizard Workshop (Feb 2020)

Data Stewardship Wizard brings together data stewards and researchers to allow managing data in projects efficiently and in a FAIR manner. Data stewards can easily capture the knowledge including required project data and decisions in knowledge models that are then turned into...

Scientific topics: Data governance, Data management

Keywords: Data management plan, data stewardship, FAIR, data management, software tools

Resource type: Video, Webinar, Slides