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11 materials found

Authors: Gary Bader  or erxleben 


Pathways and Network Analysis of -Omics data 2018 Module 3-Network Visualization and Analysis with Cytoscape

Course covers the bioinformatics concepts and tools available for interpreting a gene list using pathway and network information.

Pathways and Network Analysis of -Omics Data 2018 Module 1-Introduction to Pathway and Network Analysis

Course covers the bioinformatics concepts and tools available for interpreting a gene list using pathway and network information.

Pathways and Network Analysis of -Omics Data 2017 Module 3-Network Visualization and Analysis with Cytoscape

Course covers the bioinformatics tools available for analyzing and conducting pathway and network analysis on a gene list.

Pathways and Network Analysis 2017 Module 2-Finding Over-Represented Pathways

Course covers the bioinformatics tools available for analyzing and conducting pathway and network analysis on a gene list.

Pathways and Network Analysis of -Omics Data 2017 Module 1-Introduction to Pathway and Network Analysis

Course covers the bioinformatics tools available for analyzing and conducting pathway and network analysis on a gene list.

Genome Annotation - Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

Resource type: Tutorial

ChIP-Seq data analysis - Identification of the binding sites of the Estrogen receptor

ChIP-sequencing is a method used to analyze protein interactions with DNA.

Questions of the tutorial:

  • How is raw ChIP-seq data processed and analyzed?
  • What are the binding sites of the Estrogen receptor?

Objectives of the tutorial:

  • Inspect read quality with FastQC
  • Map reads with...

Resource type: Tutorial

Variant Analysis - Exome sequencing data analysis

Exome sequencing means that all protein-coding genes in a genome are sequenced

Questions of the tutorial:

  • How to identify the genetic variation with the use of exome sequencing?
  • What is the pipeline of the process of finding genetic variation which caused the disease?

Objectives of the...

Resource type: Tutorial

ChIP-Seq data analysis - Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)

ChIP-sequencing is a method used to analyze protein interactions with DNA.

Questions of the tutorial:

  • How is raw ChIP-seq data processed and analyzed?
  • What are the binding sites of Tal1?
  • Which genes are regulated by Tal1?

Objectives of the tutorial:

  • Inspect read quality with FastQC -...

Resource type: Tutorial

Transcriptomics - Reference-based RNA-Seq data analysis

Training material for all kinds of transcriptomics analysis.

Questions of the tutorial:

  • What are the effects of Pasilla (PS) gene depletion on splicing events?
  • How to analyze RNA sequencing data using a reference genome?

Objectives of the tutorial:

  • Analysis of RNA sequencing data using...

Resource type: Tutorial

Transcriptomics - Introduction to Transcriptomics

Training material for all kinds of transcriptomics analysis.