Authors: Aidan Budd or Erik Hjerde
The topic is on how you can use NeLS (nels.bioinfo.no) to store and share data, and to run analyses via customisable analysis workflows in usegalaxy.no. You will practice on transferring data between NeLS and usegalaxy.no, and to construct and run a complete sequence analysis workflow in...
Keywords: NeLS, Data storage, data sharing, Data analysis
Slides from Data Management Planning online workshop for Life Science Projects for researchers
Scientific topics: Data management
Operations: Data retrieval, Data handling, Deposition
Keywords: data management plan, NeLS, TSD, metadata, sensitive, data publication, data protection, storage, identifiers, DMP, licensing, Compliance, data life cycle - collect, data life cycle - reuse, data life cycle - analyse, data life cycle - process, data life cycle - preserve, data life cycle - share, data life cycle - plan
Resource type: Slides
Materials from the ELIXIR workshop “Hands-on workshop in Marine Metagenomics”, Nov 26-30 2018 at the Arctic University of Norway, Tromso, Norway
Scientific topics: Marine biology, Metagenomics, Genomics
Keywords: Marine Metagenomics, eLearning, EeLP
Resource type: course materials, Training materials, Slides
Metagenomics investigates the composition and function of microbial communities in different environments based on direct isolation of genetic material. It has been accelerated by the advances in high-throughput sequencing technologies, and the increasing data sizes require efficient analysis...
Scientific topics: Metagenomics
Resource type: Video, course materials
Slides used for teaching an introduction to phylogenies and MSAs in the context of phylogenies for the first day of a two-day course on MSAs at Cambridge University, in the UK, in December 2013. Course taught together with Holger Dinkel and Terri Attwood.
Keywords: Molecular evolution, Multiple sequence alignment, Phylogenetics, Protein sequence analysis, Sequence alignment
A presentation given as part of the Basic Evolution Workshop, a trans-African virtual training course (described in this BioEssays article PMID: 21312200; the course wiki is here http://molecevol10.wikispaces.com/). Introduces concepts of splits, consensus trees, consensus networks, describes...
Keywords: Bootstrap, Consensus trees, Phylogenetic splits, Phylogenetics
An introduction to multiple sequence alignments (MSAs) for bench biologists delivered as part of the EMBL Australia Masterclass on Protein Sequence Analysis http://oz-masterclass.wikispaces.com/ . Focuses on describing: the "anatomy" of a sequence alignment; two alternative interpretations of...
Keywords: Multiple sequence analysis, Protein structure, Sequence analysis
An introduction to bioinformatics for bench biologists delivered as part of the EMBL Australia Masterclass on Protein Sequence Analysis http://oz-masterclass.wikispaces.com/ . Focuses on using UniProt to explore different reasons why information inferred by "direct assay" and "prediction" could...
Keywords: Introduction bioinformatics
Content for a one-day course delivered in April 2013 at the University of Cambridge, together with Sarah Parks, Cilia Antoniou, and Adrian Friday.
Uses examples taken from several published papers to explore some of the assumptions and concepts we use when presenting and interpreting phylogenetic...
Keywords: Molecular evolution, Phylogenetics