Bioinformatics of Genomic Medicine 2018 Module 7-Identifying Integrative Subtypes and Building Classifiers
Course will explore various aspects of genomic medicine, covering and teaching popular tools and methods in the field.
Bioinformatics of Genomic Medicine 2018 Module 7-Identifying Integrative Subtypes and Building Classifiers
https://bioinformaticsdotca.github.io/genmed_2018
http://tess.elixir-uk.org/materials/bioinformatics-of-genomic-medicine-2018-module-7-identifying-integrative-subtypes-and-building-classifiers
Course will explore various aspects of genomic medicine, covering and teaching popular tools and methods in the field.
Anna Goldenberg
Researchers
Post-Doctoral Fellows
Graduate students
Biologists, Genomicists, Computer Scientists
Bioinformatics for Cancer Genomics 2017 Module 9-Clinical Data Integration
Course covers the bioinformatics tools required to analyze genomic data sets.
Bioinformatics for Cancer Genomics 2017 Module 9-Clinical Data Integration
https://bioinformaticsdotca.github.io//bicg_2017
http://tess.elixir-uk.org/materials/bioinformatics-for-cancer-genomics-2017-module-9-clinical-data-integration
Course covers the bioinformatics tools required to analyze genomic data sets.
Anna Goldenberg
Graduate students
Researchers
Post-Doctoral Fellows
Biologists, Genomicists, Computer Scientists
Bioinformatics of Genomic Medicine 2017 Module 7-Patient Similarity Fusion
Course covers various aspects of genomic medicine, covering and teaching popular tools and methods in the field.
Bioinformatics of Genomic Medicine 2017 Module 7-Patient Similarity Fusion
https://bioinformaticsdotca.github.io/genomic_medicine_2017
http://tess.elixir-uk.org/materials/bioinformatics-of-genomic-medicine-module-7-patient-similarity-fusion
Course covers various aspects of genomic medicine, covering and teaching popular tools and methods in the field.
Anna Goldenberg
Graduate students
Researchers
Biologists, Genomicists, Computer Scientists
Post-Doctoral Fellows
Introduction to Multiple Sequence Alignments (MSAs) and Phylogenies
Slides used for teaching an introduction to phylogenies and MSAs in the context of phylogenies for the first day of a two-day course on MSAs at Cambridge University, in the UK, in December 2013. Course taught together with Holger Dinkel and Terri Attwood.
Keywords: Molecular evolution, Multiple sequence alignment, Phylogenetics, Protein sequence analysis, Sequence alignment
Introduction to Multiple Sequence Alignments (MSAs) and Phylogenies
https://www.mygoblet.org/training-portal/materials/introduction-multiple-sequence-alignments-msas-and-phylogenies
http://tess.elixir-uk.org/materials/introduction-to-multiple-sequence-alignments-msas-and-phylogenies
Slides used for teaching an introduction to phylogenies and MSAs in the context of phylogenies for the first day of a two-day course on MSAs at Cambridge University, in the UK, in December 2013. Course taught together with Holger Dinkel and Terri Attwood.
Aidan Budd
Molecular evolution, Multiple sequence alignment, Phylogenetics, Protein sequence analysis, Sequence alignment
Bench biologists
Post-Doctoral Fellows
Postgraduate students
principle investigators
2013-12-19
2017-10-09
Summarising sets of phylogenies
A presentation given as part of the Basic Evolution Workshop, a trans-African virtual training course (described in this BioEssays article PMID: 21312200; the course wiki is here http://molecevol10.wikispaces.com/). Introduces concepts of splits, consensus trees, consensus networks, describes...
Keywords: Bootstrap, Consensus trees, Phylogenetic splits, Phylogenetics
Summarising sets of phylogenies
https://www.mygoblet.org/training-portal/materials/summarising-sets-phylogenies
http://tess.elixir-uk.org/materials/summarising-sets-of-phylogenies
A presentation given as part of the Basic Evolution Workshop, a trans-African virtual training course (described in this BioEssays article PMID: 21312200; the course wiki is here http://molecevol10.wikispaces.com/). Introduces concepts of splits, consensus trees, consensus networks, describes examples of applications of these tools, along with introducing ideas of tree topology and some terminology associated with it. Designed for remote training.
Aidan Budd
Bootstrap, Consensus trees, Phylogenetic splits, Phylogenetics
Bench biologists
2013-10-23
2017-10-09
Introduction to Multiple Sequence Alignment
An introduction to multiple sequence alignments (MSAs) for bench biologists delivered as part of the EMBL Australia Masterclass on Protein Sequence Analysis http://oz-masterclass.wikispaces.com/ . Focuses on describing: the "anatomy" of a sequence alignment; two alternative interpretations of...
Keywords: Multiple sequence analysis, Protein structure, Sequence analysis
Introduction to Multiple Sequence Alignment
https://www.mygoblet.org/training-portal/materials/introduction-multiple-sequence-alignment
http://tess.elixir-uk.org/materials/introduction-to-multiple-sequence-alignment
An introduction to multiple sequence alignments (MSAs) for bench biologists delivered as part of the EMBL Australia Masterclass on Protein Sequence Analysis http://oz-masterclass.wikispaces.com/ . Focuses on describing: the "anatomy" of a sequence alignment; two alternative interpretations of alignmetns (structural and evolutionary), and ways of building manual and automatic alignments, and an introduction to JalView
Aidan Budd
Multiple sequence analysis, Protein structure, Sequence analysis
Bench biologists
2013-10-23
2017-10-09
Introduction to Bioinformatics
An introduction to bioinformatics for bench biologists delivered as part of the EMBL Australia Masterclass on Protein Sequence Analysis http://oz-masterclass.wikispaces.com/ . Focuses on using UniProt to explore different reasons why information inferred by "direct assay" and "prediction" could...
Keywords: Introduction bioinformatics
Introduction to Bioinformatics
https://www.mygoblet.org/training-portal/materials/introduction-bioinformatics
http://tess.elixir-uk.org/materials/introduction-to-bioinformatics
An introduction to bioinformatics for bench biologists delivered as part of the EMBL Australia Masterclass on Protein Sequence Analysis http://oz-masterclass.wikispaces.com/ . Focuses on using UniProt to explore different reasons why information inferred by "direct assay" and "prediction" could be wrong, and what we can do to spot it.
Aidan Budd
Introduction bioinformatics
Bench biologists
2013-10-23
2017-10-09
Interpreting Phylogenies
Content for a one-day course delivered in April 2013 at the University of Cambridge, together with Sarah Parks, Cilia Antoniou, and Adrian Friday.
Uses examples taken from several published papers to explore some of the assumptions and concepts we use when presenting and interpreting phylogenetic...
Keywords: Molecular evolution, Phylogenetics
Interpreting Phylogenies
https://www.mygoblet.org/training-portal/materials/interpreting-phylogenies
http://tess.elixir-uk.org/materials/interpreting-phylogenies
Content for a one-day course delivered in April 2013 at the University of Cambridge, together with Sarah Parks, Cilia Antoniou, and Adrian Friday.
Uses examples taken from several published papers to explore some of the assumptions and concepts we use when presenting and interpreting phylogenetic trees. Includes exercises on visulaising and manipulating trees using Dendroscope and NJplot to reinforce some of these ideas, while also providing a very basic overview of steps involved in a generic phylogenetic analysis.
Aidan Budd
Molecular evolution, Phylogenetics
experimeintal biologist researchers
field biologist researchers
2013-09-13
2017-10-09
