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RNA-seq module Bert Overduin

https://microasp.upsc.se/ngs_trainers/Materials/tree/master/Content/RNA-Seq/Bert_Overduin/README.md

RNA-seq module Bert Overduin

Keywords

RNA-Seq, Pre-processing, QC, Alignment

Authors

  • Bert Overduin, @bert

Top | Keywords | Authors | Description | Aims | Prerequisites | Target audience | Learning objectives | Materials | Data | Technical requirements | Literature references

Description

All material concerning RNA-seq analysis

Aims

Give an overview of all steps needed to analyse RNA-seq data

Top | Keywords | Authors | Description | Aims | Prerequisites | Target audience | Learning objectives | Materials | Data | Technical requirements | Literature references

Prerequisites

  • dependent on submodule

Target audience

  • dependent on submodule

Learning objectives

  • dependent on submodule

Top | Keywords | Authors | Description | Aims | Prerequisites | Target audience | Learning objectives | Materials | Data | Technical requirements | Literature references

Materials

  • Edinburgh Genomics Course 2014

Data

### Description
Described in the submodules

Availability

Detailed in the submodules

Top | Keywords | Authors | Description | Aims | Prerequisites | Target audience | Learning objectives | Materials | Data | Technical requirements | Literature references

Technical requirements

  • FastQC
  • FastQmcf
  • TopHat
  • Bowtie
  • samtools

Literature references

  • dependent on submodule

Top | Keywords | Authors | Description | Aims | Prerequisites | Target audience | Learning objectives | Materials | Data | Technical requirements | Literature references

Scientific topics: RNA-Seq

Keywords: RNA-Seq, Pre-processing, QC, Alignment

Authors: Bert Overduin, @bert

RNA-seq module Bert Overduin http://tess.elixir-uk.org/materials/rna-seq-module-bert-overduin All material concerning RNA-seq analysis RNA-Seq RNA-Seq, Pre-processing, QC, Alignment