hands-on tutorial
Hands-on for 'Preparing genomic data for phylogeny reconstruction' tutorial
The questions this addresses are:
- How do I find a set of common proteins (orthologs) across related species or strains?
- How do I organize a set of orthologs to infer evolutionary relations between species or strains (phylogenetic reconstruction)?
The objectives are:
- Mask repetitive elements from a genome
- Annotate (predict protein-coding genes) the genomes of the samples to compare
- Find a set of common proteins across the samples (orthologs)
- Align orthologs across samples
Licence: Creative Commons Attribution 4.0 International
Keywords: ecology, phylogeny, data handling, functional annotation
Target audience: Students
Resource type: hands-on tutorial
Contributors: Brigida Gallone, Miguel Roncoroni
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