hands-on tutorial

Hands-on for 'Identification of the binding sites of the Estrogen receptor' tutorial

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The questions this addresses are:
- How is raw ChIP-seq data processed and analyzed?
- What are the binding sites of the Estrogen receptor?

The objectives are:
- Inspect read quality with FastQC
- Map reads with Bowtie2
- Assess the quality of an ChIP-seq experiments
- Extract coverage files
- Call enriched regions or peaks

Licence: Creative Commons Attribution 4.0 International

Keywords: epigenetics, ChIP-seq, work-in-progress

Target audience: Students

Resource type: hands-on tutorial

Authors: Anika Erxleben, Bérénice Batut, Fidel Ramirez, Friederike Dündar, Vivek Bhardwaj

Contributors: Anika Erxleben, Bérénice Batut, Fidel Ramirez, Friederike Dündar, Vivek Bhardwaj

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