hands-on tutorial
Hands-on for 'Evaluating and ranking a set of pathways based on multiple metrics' tutorial
The questions this addresses are:
- How to evaluate a set of heterologous pathways ?
The objectives are:
- Calculate the production flux of the lycopene target molecule using Flux Balance Analysis tool.
- Compute thermodynamics values to optimize the yield of the reaction producing the lycopene using Thermo tool.
- Compute the global score for the previous annotated pathways.
- Rank the computed heterologous pathways depending on their score.
Licence: Creative Commons Attribution 4.0 International
Keywords: synthetic-biology
Target audience: Students
Resource type: hands-on tutorial
Contributors: Guillaume Gricourt, Ioana Popescu, Jean-Loup Faulon, Joan Hérisson, Kenza Bazi-Kabbaj, Thomas Duigou
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