hands-on tutorial

Hands-on for 'Analyse HeLa fluorescence siRNA screen' tutorial

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The questions this addresses are:
- How do I analyze a HeLa fluorescence siRNA screen?
- How do I segment cell nuclei?
- How do I extract features from segmentations?
- How do I filter segmentations by morphological features?
- How do I apply a feature extraction workflow to a screen?
- How do I visualize feature extraction results?

The objectives are:
- How to segment cell nuclei in Galaxy.
- How to extract features from segmentations in Galaxy.
- How to filter segmentations by morphological features in Galaxy.
- How to extract features from an imaging screen in Galaxy.
- How to analyse extracted features from an imaging screen in Galaxy.

Licence: Creative Commons Attribution 4.0 International

Keywords: imaging, HeLa

Target audience: Students

Resource type: hands-on tutorial

Authors: Thomas Wollmann

Contributors: Thomas Wollmann

Scientific topics: Imaging

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