Analysis of huge metabolic models with COBREXA.jl

COBREXA.jl is a new software package to enable the analysis and simulation of large metabolic models by taking advantages of modern HPC infrastructure. Mainly, it advanced the scalability of constraint-based method, using the Julia programing language and its mathematic ecosystem as a base building block. We will talk about the problems that motivated the development of COBREXA.jl and show several of its main applications.

Keywords: cell-level simulations, HPC, Biomodelling


Additional information

Target audience: Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities

Resource type: Webinar

Authors: Miroslav Kratochvil

Scientific topics: Simulation experiment

External resources:

COBREXA.jl