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360 events found

Target audience: PhD students 

  • Genome assembly and annotation course

    12 - 14 October 2016

    Prague, Czechia

    Elixir node event
    Genome assembly and annotation course http://tess.elixir-uk.org/events/genome-assembly-and-annotation-course ELIXIR Genome assembly and annotation course, Oct 12-14 2016 at the IOCB, Prague, Czech Republic 2016-10-12 09:00:00 UTC 2016-10-14 17:00:00 UTC ELIXIR CZ, IOCB Prague Institute of Organic Chemistry and Biochemistry AS CR, 2, Flemingovo náměstí, Prague, Czechia Institute of Organic Chemistry and Biochemistry AS CR, 2, Flemingovo náměstí Prague Hlavní město Praha Czechia Genomics IOCB Prague [] life scientistsResearchersPhD students workshops_and_courses registration_of_interest genomicsassemblytrainingeLearningEeLP
  • Unix/Linux Tutorial for Beginners

    17 - 19 October 2016

    Elixir node event
    Unix/Linux Tutorial for Beginners http://tess.elixir-uk.org/events/unix-linux-tutorial-for-beginners-b1fe99bb-880f-43eb-8d81-7366ba9a5d0c ELIXIR tutorial "Unix/Linux Tutorial for Beginners", Oct 17-19, 2016 2016-10-17 09:00:00 UTC 2016-10-19 17:00:00 UTC ELIXIR Slovenia, ELIXIR Sweden, NBIS Computer science University of Ljubljana, Faculty of MedicineNBIS [] life scientistsResearchersPhD studentsUndergraduate students workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Train-the-Trainer course

    28 - 30 November 2016

    Ljubljana, Slovenia

    Elixir node event
    Train-the-Trainer course http://tess.elixir-uk.org/events/train-the-trainer-course ELIXIR-EXCELERATE Train-the-Trainer course, Nov 28-30, 2016 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2016-11-28 09:00:00 UTC 2016-11-30 17:00:00 UTC ELIXIR Slovenia University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students 20 workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Linux Command line course

    30 November 2016

    Ljubljana, Slovenia

    Elixir node event
    Linux Command line course http://tess.elixir-uk.org/events/linux-command-line-course ELIXIR tutorial "Linux Command line course", Nov 30, 2016 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2016-11-30 09:00:00 UTC 2016-11-30 17:00:00 UTC ELIXIR Slovenia University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students 20 workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Unix/Linux Tutorial for Beginners 2

    27 - 29 March 2017

    Elixir node event
    Unix/Linux Tutorial for Beginners 2 http://tess.elixir-uk.org/events/unix-linux-tutorial-for-beginners-2 ELIXIR tutorial "Unix/Linux Tutorial for Beginners 2", Mar 27-29, 2017 2017-03-27 09:00:00 UTC 2017-03-29 17:00:00 UTC ELIXIR Slovenia, ELIXIR Sweden, NBIS Computer science University of Ljubljana, Faculty of MedicineNBIS [] life scientistsResearchersPhD studentsUndergraduate students workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Genome assembly and annotation course 2

    19 - 23 June 2017

    Ljubljana, Slovenia

    Elixir node event
    Genome assembly and annotation course 2 http://tess.elixir-uk.org/events/genome-assembly-and-annotation-course-2 ELIXIR Genome assembly and annotation course 2, June 19-23 2017 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2017-06-19 09:00:00 UTC 2017-06-23 17:00:00 UTC ELIXIR SI, University of Ljubljana, Faculty of Medicine University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Genomics University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students workshops_and_courses registration_of_interest genomicsassemblytrainingeLearningEeLP
  • Cancer Genomics

    20 - 23 June 2017

    Cambridge, United Kingdom

    Elixir node event
    Cancer Genomics http://tess.elixir-uk.org/events/cancer-genomics-2017 This course will focus on the analysis of data from genomic studies of Cancer. 2017-06-20 08:30:00 UTC 2017-06-23 17:45:00 UTC Gabriella Rustici European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) - Training Room 1 Cambridge Cambridgeshire United Kingdom CB10 1SD [] Johanna Langrish [] PhD studentsPostdoctoral Researchers 30 workshops_and_courses registration_of_interest HDRUK
  • In Silico Systems Biology

    9 - 14 July 2017

    Cambridge, United Kingdom

    Elixir node event
    In Silico Systems Biology http://tess.elixir-uk.org/events/in-silico-systems-biology-e96b3852-5b7b-4e70-a1d7-2c3352ce59a4 Run jointly with the Wellcome Trust, this course will provide participants with an introduction to network analysis and an in-depth training in the main modelling approaches used in systems biology. 2017-07-09 12:00:00 UTC 2017-07-14 16:00:00 UTC European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) - Training Room 1 Cambridge United Kingdom CB10 1SD [] EMBL-EBI Training Team [] PhD studentsResearchers 30 workshops_and_courses registration_of_interest HDRUK
  • Marine Mammals Research and Conservation Course

    4 September - 8 February 2017

    Faro, Portugal

    Marine Mammals Research and Conservation Course http://tess.elixir-uk.org/events/marine-mammals-research-and-conservation-course Theory and practice: lectures, field trips out to sea to collect data, data handling, photo-identifications, distribution, abundance, behaviour, habitat use, human interactions, social structure, conservation, and more... Course materials and certificate will be presented. The course is equivalent to 3 ECTs. 2017-09-04 09:00:00 UTC 2017-02-08 18:00:00 UTC Centro de Ciencias do Mar (CCMAR) CIIMAR-Madeira - Interdisciplinary Centre of Marine and Environmental Research of Madeira, Faro, Portugal CIIMAR-Madeira - Interdisciplinary Centre of Marine and Environmental Research of Madeira Faro Portugal Mammals Marine biology CCMAR, Centre for Marine SciencesCIIMAR-Madeira [] PhD studentsPostdoctoral studentsAcademicsIndustry workshops_and_courses [] marine mammals
  • Sequences and genomic features in R

    4 September 2017

    Melbourne, Australia

    Sequences and genomic features in R http://tess.elixir-uk.org/events/sequences-and-genomic-features-in-r This course introduces Bioconductor, a comprehensive collection of R packages related to bioinformatics. We will demonstrate the Bioconductor way of doing things and how to work with biological data types, and equip you to confidently approach whichever specific Bioconductor packages you need. Pre-requisite To attend this class, you must have attended our introductory R course or be reasonably familiar with the R language. 2017-09-04 14:00:00 UTC 2017-09-04 16:00:00 UTC Monash Bioinformatics Platform Melbourne, Melbourne, Australia Melbourne Melbourne Australia Bioinformatics Monash University Dr Sonika Tyagi, bioinformatics.platform@monash.edu [] PhD studentsPost-docsBioinformaticiansResearchers workshops_and_courses registration_of_interest R-programmingbioinformaticsBioconductor
  • Genome assembly and annotation course 3

    23 - 27 October 2017

    Oeiras, Portugal

    Elixir node event
    Genome assembly and annotation course 3 http://tess.elixir-uk.org/events/genome-assembly-and-annotation-course-3 ELIXIR Genome assembly and annotation course 3, Oct 23-27 2017 at the Gulbenkian Institute of Science, Oeiras, Portugal 2017-10-23 09:00:00 UTC 2017-10-27 17:00:00 UTC ELIXIR PT, Instituto Gulbenkian Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande, Oeiras, Portugal Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande Oeiras Portugal Genomics Instituto Gulbenkian de Ciência [] life scientistsResearchersPhD students workshops_and_courses registration_of_interest genomics AssemblyTrainingeLearningEeLP
  • Introduction to DNA-seq NGS Analysis Workshop, November 2017

    20 - 21 November 2017

    Leicester, United Kingdom

    Elixir node event
    Introduction to DNA-seq NGS Analysis Workshop, November 2017 http://tess.elixir-uk.org/events/introduction-to-dna-seq-ngs-analysis-workshop-november-2017 This two day course serves as the first in a larger two-part course in conjunction with our Exome Variants, Copy Number Calling, Variant Annotation and Reporting workshop in December 2017, as well as a standalone introduction to DNA-seq. Attendees will receive an introduction to next generation sequencing (NGS) platforms, data analysis and tools for data quality control, read alignment (mapping) and refinement using DNA-seq data. The course will conclude with a basic introduction to variant calling as a lead-in to the December workshop. 2017-11-20 09:00:00 UTC 2017-11-21 17:00:00 UTC University of Leicester BBASH College Court, Leicester, United Kingdom College Court Leicester Leicestershire United Kingdom LE2 3UF Bioinformatics Genetics University of Leicester [] AcademicspostdocsPhD studentsClinical Scientists workshops_and_courses [] DNA-seqbioinformatics
  • Exome Variants, Copy Number Calling, Variant Annotation and Reporting workshop, December 2017

    4 - 5 December 2017

    Leicester, United Kingdom

    Elixir node event
    Exome Variants, Copy Number Calling, Variant Annotation and Reporting workshop, December 2017 http://tess.elixir-uk.org/events/exome-variants-copy-number-calling-variant-annotation-and-reporting-workshop-december-2017 This course is aimed at clinicians and wet-lab biologists who are involved in research projects requiring the analysis of exome data, interpretation of sequence variation identified during genomic analyses, and preparing accurate sequence variation descriptions for publication, clinical reporting and data basing. Attendees will receive an introduction to calling variants and copy number alterations from exome sequencing data alignment files, reference sequences, variation nomenclature, variant annotation, variant effect prediction, and clinical and publication reporting recommendations. This course serves as the second in a two-part workshop. The first part, an Introduction to DNA-seq, will be held in November 2017. While attendance of the November workshop is not a pre-requisite, familiarity with the topics it covers will be necessary. 2017-12-04 09:00:00 UTC 2017-12-05 17:00:00 UTC University of Leicester BBASH College Court, Leicester, United Kingdom College Court Leicester Leicestershire United Kingdom LE2 3UF Bioinformatics Exome sequencing University of Leicester [] AcademicspostdocsPhD studentsClinical Scientists workshops_and_courses [] []
  • CESNET e-infrastructure workshop

    11 December 2017

    Prague, Czechia

    Elixir node event
    CESNET e-infrastructure workshop http://tess.elixir-uk.org/events/cesnet-e-infrastructure-workshop In Czech, CESNET, GEANT, DataCare, Metacentrum, HPC, ELIXIR, EDGAIN, SAGElab, Cloud computing 2017-12-11 08:30:00 UTC 2017-12-11 16:45:00 UTC CESNET Thákurova 550/1, 1, Thákurova, Prague, Czechia Thákurova 550/1, 1, Thákurova Prague Hlavní město Praha Czechia Data security Database management Data management Computer science [] [] PhD studentspostdocLife Science Researchers 200 meetings_and_conferences registration_of_interest Cloud computingcomputer-scienceDatabases
  • BBC2017

    13 December - 14 October 2017

    Leuven, Belgium

    BBC2017 http://tess.elixir-uk.org/events/bbc2017 The BBC is the key annual event that brings together researchers working at the intersection of a broad range of disciplines including computer science, biology, and medicine in Belgium, the Netherlands and Luxembourg. Don’t miss the chance to use the power of our network, join the conference by filling in the registration form (“Registration” section). The Benelux Bioinformatics Conference is the primary community event for bioinformatics researchers in the Netherlands, Belgium, and Luxembourg with excellent networking opportunities. The conference is aimed at both academic and industry researchers. In two days it will feature: Extended keynote presentations on recent breakthroughs in bioinformatics and systems biology Short presentations contributed by the participants and detailing recent advances Extensive poster sessions for informal discussions and networking Flash talks about the posters exposed to make sure you don’t miss a thing Networking social dinner to improve the bonds with your colleagues 2 different workshops to explore and discover new interesting topics 2017-12-13 14:00:00 UTC 2017-10-14 18:00:00 UTC Daniele Parisi, Cedric Lood, Nikolina Šoštarić, Vera Van Noort Leuven, Leuven, Belgium Leuven Leuven Flemish Brabant Belgium 3001 KU Leuven Daniele Parisi daniele.parisi@esat.kuleuven.be Nikolina Šoštarić nikolina.sostaric@kuleuven.be Cédric Lood cedric.lood@kuleuven.be Elixir Belgium PhD studentspostdocsMaster studentsProfessorsResearchers meetings_and_conferences registration_of_interest bioinformaticsComputationalBiology
  • Advanced Scientific Programming in Python

    14 - 21 January 2018

    Melbourne, Australia

    Advanced Scientific Programming in Python http://tess.elixir-uk.org/events/advanced-scientific-programming-in-python Applications are now open for this international school being held in the Southern Hemisphere for the first time. The Advanced Scientific Programming in Python (ASPP) summer school has had 10 extremely successful iterations in Europe (https://python.g-node.org/archives). Now, thanks to funding from the International Neuroinformatics Coordinating Facility (INCF), Melbourne is hosting the first ASPP workshop focussed on the Asia Pacific region. 2018-01-14 17:51:00 UTC 2018-01-21 17:51:00 UTC Juan Nunez-Iglesias, Melbourne Bioinformatics University of Melbourne, Melbourne, Australia University of Melbourne Melbourne Australia Imaging Neurobiology Informatics University of Melbourne aspp@melbournebioinformatics.org.au INCF Life Science Researcherspost-docsPhD studentsMaster studentsbioinformaticians workshops_and_courses [] Pythonneurosciencesbioinformatics
  • Think Tank Hackathon

    6 - 7 February 2018

    Ljubljana, Slovenia

    Elixir node event
    Think Tank Hackathon http://tess.elixir-uk.org/events/think-tank-hackathon CHARME Think Tank Hackathon, Feb 6-7, 2018 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2018-02-06 09:00:00 UTC 2018-02-07 17:00:00 UTC CHARME, ELIXIR Slovenia, NIB University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students 20 workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Introductory Linux Tutorial for Life Sciences 3

    13 - 15 February 2018

    Elixir node event
    Introductory Linux Tutorial for Life Sciences 3 http://tess.elixir-uk.org/events/introductory-linux-tutorial-for-life-sciences-3 ELIXIR tutorial "Introductory Linux Tutorial for Life Sciences 3", Feb 13-15, 2018 2018-02-13 09:00:00 UTC 2018-02-15 17:00:00 UTC ELIXIR Slovenia, ELIXIR Sweden, NBIS University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of MedicineNBIS [] life scientistsResearchersPhD studentsUndergraduate students workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • First Steps with R in Life Sciences

    12 - 13 March 2018

    Basel, Switzerland

    Elixir node event
    First Steps with R in Life Sciences http://tess.elixir-uk.org/events/first-steps-with-r-in-life-sciences-696a4ac3-567e-4ab4-8e2f-9b69dd71c4a4 Overview R is a complete, flexible and open source system for statistical analysis and graphics, which has become a tool of choice for biologists and biomedical scientists who need to analyse and visualise large amounts of data. 2018-03-12 09:00:00 UTC 2018-03-13 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Data Management Plan

    15 March 2018

    Lausanne, Switzerland

    Elixir node event
    Data Management Plan http://tess.elixir-uk.org/events/data-management-plan This course is co-organised by the CUSO/StarOmics doctoral program. Priority is given to its members, but is open to everyone. 2018-03-15 09:00:00 UTC 2018-03-15 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Protein sequence databases and sequence annotation

    20 March 2018

    Lausanne, Switzerland

    Elixir node event
    Protein sequence databases and sequence annotation http://tess.elixir-uk.org/events/protein-sequence-databases-and-sequence-annotation Overview Using high-throughput technologies, you can identify long lists of candidate genes that differ between two experimental conditions. 2018-03-20 09:00:00 UTC 2018-03-20 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Enrichment Analysis

    21 March 2018

    Lausanne, Switzerland

    Elixir node event
    Enrichment Analysis http://tess.elixir-uk.org/events/enrichment-analysis-7d10ba1e-4c96-49d6-a074-d4ed34b8a654 The course is full, with a long waiting list. 2018-03-21 09:00:00 UTC 2018-03-21 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Chip-seq data analysis: from quality check to motif discovery and more - An introduction to the tools and databases of the EPD team

    9 - 13 April 2018

    Lausanne, Switzerland

    Elixir node event
    Chip-seq data analysis: from quality check to motif discovery and more - An introduction to the tools and databases of the EPD team http://tess.elixir-uk.org/events/chip-seq-data-analysis-from-quality-check-to-motif-discovery-and-more-an-introduction-to-the-tools-and-databases-of-the-epd-team-df3259bc-99f9-47f0-919f-3793c926cc99 Overview This is a course on bioinformatics resources taught by the developers of the resources. 2018-04-09 09:00:00 UTC 2018-04-13 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • R packaging

    17 April 2018

    Lausanne, Switzerland

    Elixir node event
    R packaging http://tess.elixir-uk.org/events/r-packaging The course is now closed. Overview In this course, R programmers will learn how to create R packages, the best way to make R scripts reusable. Participants will learn how to identify and create clear, clean and usable packages in R. 2018-04-17 09:00:00 UTC 2018-04-17 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First steps with R in Life Sciences

    19 - 20 April 2018

    Bern, Switzerland

    Elixir node event
    First steps with R in Life Sciences http://tess.elixir-uk.org/events/first-steps-with-r-in-life-sciences-9438ac46-684f-4653-bd28-f2c3525fd43f The course is full. Overview R is a complete, flexible and open source system for statistical analysis and graphics, which has become a tool of choice for biologists and biomedical scientists who need to analyse and visualise large amounts of data. 2018-04-19 09:00:00 UTC 2018-04-20 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Transcriptomics Analysis: RNA-seq

    25 - 26 April 2018

    Lausanne, Switzerland

    Elixir node event
    Transcriptomics Analysis: RNA-seq http://tess.elixir-uk.org/events/transcriptomics-analysis-rna-seq-3088a64a-5666-49d7-9d19-deb876e0bc2a The course is full with a long waiting list. Overview This two-day course will provide an overview of the RNA-seq analysis pipeline, as well as the downstream analysis of the resulting data using bioconductor packages in R. 2018-04-25 09:00:00 UTC 2018-04-26 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Prague Protein Spring 2018

    3 - 6 May 2018

    Prague, Czechia

    Prague Protein Spring 2018 http://tess.elixir-uk.org/events/prague-protein-spring-2018 PPS 2018 aims to cover a thematic issue: "Proteins at Work" addressing concepts and system approaches demonstrated on selected general topics: "Proteins in living cells", "Large Scale organization of Proteins", "Proteins in Biomineralization" and "Integrating knowledge about Proteins at the systems' level". Detailed scientific programme: https://www.pragueproteinspring.cz/scientific-program 2018-05-03 18:00:00 UTC 2018-05-06 12:00:00 UTC Institute of Organic Chemistry and Biochemistry AS CR Vila Lanna, V Sadech 1, Prague, Czechia Vila Lanna, V Sadech 1 Prague Czechia 160 00 [] https://www.pragueproteinspring.cz/contacts [] ResearchersPhD students meetings_and_conferences first_come_first_served []
  • Intermediate R

    8 - 9 May 2018

    Basel, Switzerland

    Elixir node event
    Intermediate R http://tess.elixir-uk.org/events/intermediate-r-8f879c18-ef16-45ea-b4d9-6ccddade9c13 The course is full with a waiting list. Overview This 2-day intermediate course will move beyond simple scripts/recipes towards a more systematic understanding of R and its data structures. 2018-05-08 09:00:00 UTC 2018-05-09 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Fun with Dead Languages

    14 May 2018

    Lausanne, Switzerland

    Elixir node event
    Fun with Dead Languages http://tess.elixir-uk.org/events/fun-with-dead-languages Overview Watch in mesmerized terror as Damian hacks code in several unrelated programming languages (none of them Perl). 2018-05-14 09:00:00 UTC 2018-05-14 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Multiple Sequence Alignment with Jalview and Protein Structure and Function Modelling

    14 - 15 May 2018

    Liverpool, United Kingdom

    Elixir node event
    Multiple Sequence Alignment with Jalview and Protein Structure and Function Modelling http://tess.elixir-uk.org/events/multiple-sequence-alignment-with-jalview-and-protein-structure-and-function Date: Monday 14th to Tuesday 15th May 2018 Time: 9.00 to 17.00 Location: MSTC, Sherrington Building, University of Liverpool, L69 3BX Overview This two day hands-on training course is aimed at students and researchers who want to gain practical understanding of the tools and approaches for protein sequence, structure and function prediction and analysis. In day 1, participants will be introduced to Jalview - a free desktop application for the visualisation and comparative analysis of protein, DNA and RNA sequences. Jalview can integrate data from Ensembl, Uniprot, PDBe, Rfam and Pfam, and can access a range of tools for multiple sequence alignment, conservation analysis and secondary structure and disorder prediction, including the widely used JPred4. On the second day, participants will learn to use Jalview’s 3D structure visualisation capabilities in conjunction with UCSF Chimera, and take a whistle-stop tour of the methodologies and tools for prediction and analysis of Protein 3D structure and function. Participants are encouraged to bring their own protein analysis problems and time will be reserved at the end of day 2 for discussion. Register using the link on the Jalview website: http://www.jalview.org/training/training-courses/Multiple-Sequence-Alignment-with-Jalview-and-Protein-Structure-and Day 1: Multiple Sequence Alignment and Analysis with Jalview Workshop trainers: Dr Jim Procter and Dr Suzanne Duce 9 9.15 Introduction to the Workshop 9.15 10.30 Session 1.Loading sequences, structures and alignments with Jalview Coffee break 11 12.30 Session 2. Multiple alignment Creation and Alignment Reliability Lunch 1.30 3pm Session 3. Phylogenetic trees and subfamily analysis of Proteins and CDS Coffee break 3.30 5pm Session 4. Protein secondary structure and disorder prediction, and working with annotation Day 2: Protein Structure Analysis and Modelling Workshop trainers: Dr Jim Procter and Dr Dan Rigden 9 9.15 Introduction to Workshop Day 2 9.15 9.30 Introduction to Protein 3D Structure 9.30 10 Viewing and Comparing 3D structures with Jalview and UCSF Chimera 10 10.30 Mapping sequence conservation to Biological Assemblies with Jalview Coffee Break 11 12.30 Functional analysis of Protein Structures Lunch 1.30 2.30 Homology modelling and model quality evaluation 2.30 3.15 Ab initio models and searching for fold matches 3.15 3.30 Wrap up: Function Analysis and 3D models Coffee Break 4pm 5pm Analyse your own protein sequences and structures. 2018-05-14 09:00:00 UTC 2018-05-15 17:00:00 UTC Dr Jim Procter and Dr Dan Rigden MSTC, Sherrington Building, University of Liverpool, Liverpool, United Kingdom MSTC, Sherrington Building, University of Liverpool Liverpool Merseyside United Kingdom L69 3BX University of Liverpool Dr Jim Procter and Dr Suzanne Duce, School of Life Sciences, University of Dundee, Dundee University of Dundee PhD studentspostdoctoral researchersprinciple investigatorsLife Science Researchersbioinformaticians 45 workshops_and_courses registration_of_interest Jalviewmultiple sequence alignmentMSAprotein sequence protein structure protein predictionHomology modellingAb initio modelsChimerasubfamily analysisPhylogenetic treesProtein secondary structureUniversity of DundeeUniversity of Liverpool

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