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12 events found

Country: Spain  or Switzerland 

  • Advanced Statistics: Statistical Modelling

    22 - 25 August 2022

    Lausanne, Switzerland

    Elixir node event
    Advanced Statistics: Statistical Modelling http://tess.elixir-uk.org/events/advanced-statistics-statistical-modelling-dc58174b-c34c-468a-a484-1fa4c7ed7957 Overview While the statistical models and tools presented in an introductory statistics course (such as linear regression) can be used to answer a wide range of questions in life sciences, many types of data can not be analyzed using these simple 2022-08-22 09:00:00 UTC 2022-08-25 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to RNA-Seq: From quality control to pathway analysis

    1 - 2 September 2022

    Basel, Switzerland

    Elixir node event
    Introduction to RNA-Seq: From quality control to pathway analysis http://tess.elixir-uk.org/events/introduction-to-rna-seq-from-quality-control-to-pathway-analysis-d8c6ae2e-37f6-44fe-826e-a3348db94bd4 Overview This two-day course will present the theory and bioinformatics tools required to analyze RNA-seq gene expression data, The course will present the theory and bioinformatics tools required to analyse RNA-seq gene expression data, from the 2022-09-01 09:00:00 UTC 2022-09-02 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Comparative Genomics

    12 - 14 September 2022

    Streamed or Lausanne, Switzerland

    Elixir node event
    Comparative Genomics http://tess.elixir-uk.org/events/comparative-genomics-d3e772d0-ca37-4239-8d74-2ac20f260036 Overview The aims of this course are to (i) explore key evolutionary concepts, (ii) examine different methodological approaches, and (iii) gain hands-on experience in eukaryotic comparative genomic analyses. 2022-09-12 09:00:00 UTC 2022-09-14 00:00:00 UTC SIB, Streamed or Lausanne, Switzerland SIB Streamed or Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • ELIXIR at ECCB 2022

    12 - 21 September 2022

    Barcelona, Spain

    ELIXIR at ECCB 2022 http://tess.elixir-uk.org/events/elixir-at-the-eccb-2022 The 21st European Conference on Computational Biology (ECCB 2022) has the theme "Planetary Health and Biodiversity". This year the conference runs 12 - 21 September and is organised by the Spanish National Bioinformatics Institute (INB/ELIXIR-ES) and the Barcelona Supercomputing Center (BSC). 12 - 16 September: online workshops 18 - 21 September: a four-day conference, with keynote speakers, talks, posters and workshops ELIXIR will be present at this year's ECCB conference with the ELIXIR Communities Track on Monday and Tuesday 19 - 20 September, and workshops on Sunday 18 September. You can find details about the conference, including how to register, on the ECCB 2022 website. Programme for the ELIXIR track ELIXIR Workshop Sunday 18 September, time tbc FAIR applied: a practical FAIRification guide for life science data from FAIRplus Tony Burdett, Ibrahim Emam, Nick Juty, Philippe Rocca-Serra, Danielle Welter and Fuqi Xu More information can be found here. ELIXIR Session 1 Monday 19 September, 10:00-11:00 Identifying resources and exploring synergies between the ELIXIR 3D-Bioinfo, Proteomics and IDP Communities Emmanuel Levy, Christine Orengo, Nathalie Reuter, Sameer Velankar, Shoshana Wodak, Norman Davey, Zsuzsa Dosztanyi, Damiano Piovesan, Silvio Tosatto, Eva Csosz, Julien Marcoux, Lennart Martens, Pathmanaban Ramasamy, Juan Antonio Vizcaino, Massimiliano Bonomi and Wim Vranken Using the IDP-KG to enable IDPcentral information on submission Alasdair Gray, Ivan Mičetić and Damiano Piovesan AHoJ: rapid, tailored search and retrieval of apo and holo protein structures Christos P. Feidakis, Radoslav Krivak, David Hoksza and Marian Novotný ELIXIR Session 2 Monday 19 September, 11:30-12:30 Open source genome-scale metabolic models: why and how Mihail Anton, Barbara Szomolay and Vitor A P Martins dos Santos Genome-wide metabolic annotation for Methanocaldococcus (Methanococcus) jannaschii, the first member of the Archaea to be sequenced a quarter of a century ago Ismini Baltsavia, George Stamoulos, Konstantinos Tziavara, Alexandros Dermaris, Ioannis Iliopoulos, Ron Caspi, Peter D. Karp, Nikos C. Kyrpides and Christos A. Ouzounis Rare disease specific FAIR Maturity Indicators Núria Queralt Rosinach, Rajaram Kaliyaperumal, Annika Jacobsen, Mark Wilkinson, Marc Hanauer and Marco Roos ELIXIR Session 3 Tuesday 20 September, 10:00-11:00 Setting the scene: Beyond COVID-19 - European preparedness for infectious disease outbreaks Katharina Lauer Pathogen Data Sharing and Workflows at the ENA Colman O’Cathail (EBI/COVID19 Data Portal) Using COVID-19 data genomics and sharing to set a new future standard Bas Oude Munnink (Erasmus MC/VEO) Fully transparent viral genomics data analysis and sharing for everyone using public infrastructure Wolfgang Maier (Universitaet Freiburg/Galaxy) ELIXIR Session 4 Tuesday 20 September, 11:30-12:30 The ELIXIR Machine Learning Focus Group: achievements and the road ahead Silvio Tosatto and Fotis Psomopoulos ELIXIR Biodiversity Community - "Biodiversity data” aims and challenges Toni Gabaldón, Josephine Burgin and Robert Waterhouse Federated EGA (title tbc) Jordi Rambla Register for ECCB 2022 Submit your abstract to the ELIXIR Communities Track Track chair: Katharina Heil, ELIXIR We invite submissions of abstracts to the ELIXIR Communities Track at ECCB2022. The aim of the ELIXIR Communities Track is to showcase the latest outputs and services emerging from ELIXIR’s Communities. Submissions are open to ELIXIR Community members. They should highlight services and activities of the ELIXIR Community. Presentations should be 15 minutes and will be followed by a maximum of five-minute discussions. Presenters are encouraged to demonstrate concrete services and outputs and show clearly the benefit of their resource or activity to the ECCB audience. Accepted submissions will be presented in one of the four ELIXIR Communities Track sessions at the conference. Authors of accepted submissions will be invited to publish their presentations on the ELIXIR F1000Research Gateway. Call opens: 16 May 2022 Call closes: 29 May 2022 Authors will be notified of acceptance by 2 June 2022. Review Criteria All submissions will be evaluated according to the following criteria: Relevance, interest, and value of the topic to conference attendees. Relevance to the overall themes of ECCB2022: Data, Genome, Genes, Proteins, Systems. Relevance to ELIXIR activities. The ultimate decision of acceptance for an ELIXIR Communities Track lies with the Track Chair and ELIXIR Programme Committee. Accepted presenters are required to deliver the presentation themselves, and must register to attend the conference. Contacts For the ELIXIR Communities Track: katharina.heil@elixir-europe.org For general questions about the conference: eccb2022@bcocongresos.com 2022-09-12 09:00:00 UTC 2022-09-21 17:00:00 UTC Hotel Meliã Sitges, Barcelona, Spain Hotel Meliã Sitges Barcelona Spain [] [] [] [] [] []
  • Introduction to high-performance computing (sciCORE cluster)

    14 September 2022

    Streamed from Basel, Switzerland

    Elixir node event
    Introduction to high-performance computing (sciCORE cluster) http://tess.elixir-uk.org/events/introduction-to-high-performance-computing-scicore-cluster-73ca4b1c-7185-4a0a-9ea7-17be4fe5f45b This course is susceptible to be streamed to the registered participants, depending on the evolution of the sanitary situation Overview This full-day course has a practical focus, where participants will learn how to use the Linux command line and 2022-09-14 09:00:00 UTC 2022-09-14 00:00:00 UTC SIB, Streamed from Basel, Switzerland SIB Streamed from Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Good practice in high-throughput experiments

    21 - 22 September 2022

    Zurich or streamed, Switzerland

    Elixir node event
    Good practice in high-throughput experiments http://tess.elixir-uk.org/events/good-practice-in-high-throughput-experiments-b5752b6c-f7ee-4865-8875-ff2ee12485eb Overview This course offers an overview of good practice in high-throughput experiments (e.g. next-generation sequencing or compound screening). Particularly we focus on pitfalls in the design of projects (e.g. 2022-09-21 09:00:00 UTC 2022-09-22 00:00:00 UTC SIB, Zurich or streamed, Switzerland SIB Zurich or streamed Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • ELIXIR Innovation and SME Forum: Data driven innovation in healthcare diagnostics

    22 September 2022

    Barcelona, Spain

    ELIXIR Innovation and SME Forum: Data driven innovation in healthcare diagnostics http://tess.elixir-uk.org/events/elixir-innovation-and-sme-forum-data-driven-innovation-in-healthcare-diagnostics The Innovation and SME Forum on Data driven innovation in healthcare diagnostics is a one-day event, which will be organised in hybrid mode*. The Forum is co-located with ECCB2022 and aims to bring together researchers from large, medium and small companies and academia who work on services for data management and sharing, as well as people involved in national healthcare initiatives. This event contains a mix of high-level speakers from academia and industry and interactive sessions to discuss and interact with other companies and ELIXIR partners on the following themes: Scientific achievements in structural genetics, multigenetics, diagnostics of rare and infectious diseases Managing standards and ethics in new technologies Challenges in boosting Open Innovation in healthcare sector A specific session with Flash Talks, will give SMEs and Start-Ups the chance to introduce their work to a broad audience. Potential investment opportunities will be explored during the networking session. Aims: Give companies the chance to present technological advances in the field of healthcare diagnostics Provide a forum to discuss visionary ideas, bottlenecks and solutions to some of the major data-driven challenges  Inform participants about ELIXIR resources and create a space for networking between industry and academia. Target audience: Researchers in academia and industry interested in the data-driven health care sector Large and small companies that develop services for bio-data management and analysis Venture capital Preliminary programme: (detailed programme will be announced soon) Two Keynote talks Two Sessions of presentations from academia and industry Flash talk session Networking session *Virtual option: streaming of the talks and Slido questions for the first two sessions in the morning only. 2022-09-22 10:00:00 UTC 2022-09-22 19:00:00 UTC Hotel Meliã Sitges, Barcelona, Spain Hotel Meliã Sitges Barcelona Spain 08870 [] [] [] meetings_and_conferences [] []
  • First Steps with UNIX for Life Scientists

    26 September 2022

    Zurich, Switzerland

    Elixir node event
    First Steps with UNIX for Life Scientists http://tess.elixir-uk.org/events/first-steps-with-unix-for-life-scientists Overview With a constant evolution of technologies, life scientists (such as laboratory biologists) are faced with an increasing need for bioinformatics skills to deal with high-throughput data storage, retrieval and analysis. 2022-09-26 09:00:00 UTC 2022-09-26 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First Steps with Python in Life Sciences

    28 - 30 September 2022

    Lausanne, Switzerland

    Elixir node event
    First Steps with Python in Life Sciences http://tess.elixir-uk.org/events/first-steps-with-python-in-life-sciences-05751ded-3ccd-4325-a3bf-7fd378452f09 Overview Have you ever been stuck with a file format that doesn't precisely conform to your needs, found yourself doing annoyingly repetitive data manipulations, or struggled to efficiently manage and explore your data? Python to the rescue! 2022-09-28 09:00:00 UTC 2022-09-30 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Research Data Management and Data Management Plan

    27 - 28 October 2022

    Bern or Lausanne, Switzerland

    Elixir node event
    Research Data Management and Data Management Plan http://tess.elixir-uk.org/events/research-data-management-and-data-management-plan-feebe9bb-fbe8-4a5b-b317-77b82083ff31 Overview Recent studies have shown that worldwide, between 51% and 89% of published life sciences research is not reproducible, with consequent losses estimated at around $100 billions/year in biomedical research (Chalmers et al., 2009; Freedman 2022-10-27 09:00:00 UTC 2022-10-28 00:00:00 UTC SIB, Bern or Lausanne, Switzerland SIB Bern or Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First Steps in Parallelization with OpenMP

    23 November 2022

    Basel or streamed, Switzerland

    Elixir node event
    First Steps in Parallelization with OpenMP http://tess.elixir-uk.org/events/first-steps-in-parallelization-with-openmp-e78a74a8-b0da-4972-94c8-b58a9b5062e6 Overview We currently live in the era of multicore computers, where almost every computing machine has many CPUs. In order to benefit from this computational power, we need to devise programs explicitly written for parallel machines. 2022-11-23 09:00:00 UTC 2022-11-23 00:00:00 UTC SIB, Basel or streamed, Switzerland SIB Basel or streamed Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to high-performance computing (sciCORE cluster)

    7 December 2022

    Streamed from Basel, Switzerland

    Elixir node event
    Introduction to high-performance computing (sciCORE cluster) http://tess.elixir-uk.org/events/introduction-to-high-performance-computing-scicore-cluster-e05b9960-7646-4eb2-aaca-3e9204da4a82 This course is susceptible to be streamed to the registered participants, depending on the evolution of the sanitary situation Overview This full-day course has a practical focus, where participants will learn how to use the Linux command line and 2022-12-07 09:00:00 UTC 2022-12-07 00:00:00 UTC SIB, Streamed from Basel, Switzerland SIB Streamed from Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

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