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4 events found

Country: Spain  or Portugal 

  • "Ready for BioData Management?" Data Stewardship program for the life sciences

    21 February - 31 October 2022

    Oeiras, Portugal

    "Ready for BioData Management?" Data Stewardship program for the life sciences | ELIXIR Portugal, in collaboration with several other organizations has designed a program to train the first generation of Data Stewards for the life sciences, to support the implementation of data management, open science and FAIR data principles in Portuguese R&I organizations. It will unfold from February to October 2022, allowing trainees get some practice and consolidate the acquired knowledge. It will comprise an introductory module covering the basic concepts of Data Stewardship followed by two assignments and end with a hands-on course for knowledge consolidation. 2022-02-21 09:00:00 UTC 2022-10-31 17:00:00 UTC | ELIXIR Portugal Online and F2F (See details in training documentation), Oeiras, Portugal Online and F2F (See details in training documentation) Oeiras Portugal FAIR data Data submission, annotation, and curation Bioinformatics Data management - Elixir's portuguese node of the european projec ELIXIR Life Science Researchers 24 workshops_and_courses registration_of_interest data managementData management plandata stewardshipdata annotationlife sciencestraining
  • ELIXIR at ECCB 2022

    12 - 21 September 2022

    Barcelona, Spain

    ELIXIR at ECCB 2022 The 21st European Conference on Computational Biology (ECCB 2022) has the theme "Planetary Health and Biodiversity". This year the conference runs 12 - 21 September and is organised by the Spanish National Bioinformatics Institute (INB/ELIXIR-ES) and the Barcelona Supercomputing Center (BSC). 12 - 16 September: online workshops 18 - 21 September: a four-day conference, with keynote speakers, talks, posters and workshops ELIXIR will be present at this year's ECCB conference with the ELIXIR Communities Track on Monday and Tuesday 19 - 20 September, and workshops on Sunday 18 September. You can find details about the conference, including how to register, on the ECCB 2022 website. Programme for the ELIXIR track ELIXIR Workshop Sunday 18 September, time tbc FAIR applied: a practical FAIRification guide for life science data from FAIRplus Tony Burdett, Ibrahim Emam, Nick Juty, Philippe Rocca-Serra, Danielle Welter and Fuqi Xu More information can be found here. ELIXIR Session 1 Monday 19 September, 10:00-11:00 Identifying resources and exploring synergies between the ELIXIR 3D-Bioinfo, Proteomics and IDP Communities Emmanuel Levy, Christine Orengo, Nathalie Reuter, Sameer Velankar, Shoshana Wodak, Norman Davey, Zsuzsa Dosztanyi, Damiano Piovesan, Silvio Tosatto, Eva Csosz, Julien Marcoux, Lennart Martens, Pathmanaban Ramasamy, Juan Antonio Vizcaino, Massimiliano Bonomi and Wim Vranken Using the IDP-KG to enable IDPcentral information on submission Alasdair Gray, Ivan Mičetić and Damiano Piovesan AHoJ: rapid, tailored search and retrieval of apo and holo protein structures Christos P. Feidakis, Radoslav Krivak, David Hoksza and Marian Novotný ELIXIR Session 2 Monday 19 September, 11:30-12:30 Open source genome-scale metabolic models: why and how Mihail Anton, Barbara Szomolay and Vitor A P Martins dos Santos Genome-wide metabolic annotation for Methanocaldococcus (Methanococcus) jannaschii, the first member of the Archaea to be sequenced a quarter of a century ago Ismini Baltsavia, George Stamoulos, Konstantinos Tziavara, Alexandros Dermaris, Ioannis Iliopoulos, Ron Caspi, Peter D. Karp, Nikos C. Kyrpides and Christos A. Ouzounis Rare disease specific FAIR Maturity Indicators Núria Queralt Rosinach, Rajaram Kaliyaperumal, Annika Jacobsen, Mark Wilkinson, Marc Hanauer and Marco Roos ELIXIR Session 3 Tuesday 20 September, 10:00-11:00 Setting the scene: Beyond COVID-19 - European preparedness for infectious disease outbreaks Katharina Lauer Pathogen Data Sharing and Workflows at the ENA Colman O’Cathail (EBI/COVID19 Data Portal) Using COVID-19 data genomics and sharing to set a new future standard Bas Oude Munnink (Erasmus MC/VEO) Fully transparent viral genomics data analysis and sharing for everyone using public infrastructure Wolfgang Maier (Universitaet Freiburg/Galaxy) ELIXIR Session 4 Tuesday 20 September, 11:30-12:30 The ELIXIR Machine Learning Focus Group: achievements and the road ahead Silvio Tosatto and Fotis Psomopoulos ELIXIR Biodiversity Community - "Biodiversity data” aims and challenges Toni Gabaldón, Josephine Burgin and Robert Waterhouse Federated EGA (title tbc) Jordi Rambla Register for ECCB 2022 Submit your abstract to the ELIXIR Communities Track Track chair: Katharina Heil, ELIXIR We invite submissions of abstracts to the ELIXIR Communities Track at ECCB2022. The aim of the ELIXIR Communities Track is to showcase the latest outputs and services emerging from ELIXIR’s Communities. Submissions are open to ELIXIR Community members. They should highlight services and activities of the ELIXIR Community. Presentations should be 15 minutes and will be followed by a maximum of five-minute discussions. Presenters are encouraged to demonstrate concrete services and outputs and show clearly the benefit of their resource or activity to the ECCB audience. Accepted submissions will be presented in one of the four ELIXIR Communities Track sessions at the conference. Authors of accepted submissions will be invited to publish their presentations on the ELIXIR F1000Research Gateway. Call opens: 16 May 2022 Call closes: 29 May 2022 Authors will be notified of acceptance by 2 June 2022. Review Criteria All submissions will be evaluated according to the following criteria: Relevance, interest, and value of the topic to conference attendees. Relevance to the overall themes of ECCB2022: Data, Genome, Genes, Proteins, Systems. Relevance to ELIXIR activities. The ultimate decision of acceptance for an ELIXIR Communities Track lies with the Track Chair and ELIXIR Programme Committee. Accepted presenters are required to deliver the presentation themselves, and must register to attend the conference. Contacts For the ELIXIR Communities Track: For general questions about the conference: 2022-09-12 09:00:00 UTC 2022-09-21 17:00:00 UTC Hotel Meliã Sitges, Barcelona, Spain Hotel Meliã Sitges Barcelona Spain [] [] [] [] [] []
  • PDA22 Proteomics Data Analysis

    12 - 16 September 2022

    Oeiras, Portugal

    Elixir node event
    PDA22 Proteomics Data Analysis Mass spectrometry based proteomic experiments generate ever larger datasets and, as a consequence, complex data interpretation challenges. In this course, the concepts and methods required to tackle these challenges will be introduced, covering peptide and protein identification, quantification, and differential analysis. Moreover, more advanced experimental designs and blocking will also be introduced. The core focus will be on shotgun proteomics data, and quantification using label-free precursor peptide (MS1) ion intensities. The course will rely exclusively on free and user-friendly software, all of which can be directly applied in your lab upon returning from the course. You will also learn how to submit data to PRIDE/ProteomeXchange, which is a common requirement for publication in the field, and how to browse and reprocess publicly available data from online repositories. The course will thus provide a solid basis for beginners, but will also bring new perspectives to those already familiar with standard d ata interpretation procedures in proteomics. Note: This is a highly interactive course. It requires that the participants interact with each other and with the course instructors, in order to reach the learning outcomes in full. 2022-09-12 09:30:00 UTC 2022-09-16 18:30:00 UTC Pedro Fernandes Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Portugal 2780-156 Instituto Gulbenkian de Ciência Oeiras Valley PhD StudentsBiologists and bioinformaticians who are dealing with high-throughput gene expression data or other high-throughput data and would like to learn state-of-the-art methods for mining and analysing such researchers and principle investigators working in wet-lab biology. Participants who are looking for a basic introduction to the bioinformatics resources offered by the EMBL-EBI and want to know more about accessing biological data and tools.computational and statistical techniques are used to identify and validate the causal links between targets 20 workshops_and_courses registration_of_interest Proteomics
  • ELIXIR Innovation and SME Forum: Data driven innovation in healthcare diagnostics

    22 September 2022

    Barcelona, Spain

    ELIXIR Innovation and SME Forum: Data driven innovation in healthcare diagnostics The Innovation and SME Forum on Data driven innovation in healthcare diagnostics is a one-day event, which will be organised in hybrid mode*. The Forum is co-located with ECCB2022 and aims to bring together researchers from large, medium and small companies and academia who work on services for data management and sharing, as well as people involved in national healthcare initiatives. This event contains a mix of high-level speakers from academia and industry and interactive sessions to discuss and interact with other companies and ELIXIR partners on the following themes: Scientific achievements in structural genetics, multigenetics, diagnostics of rare and infectious diseases Managing standards and ethics in new technologies Challenges in boosting Open Innovation in healthcare sector A specific session with Flash Talks, will give SMEs and Start-Ups the chance to introduce their work to a broad audience. Potential investment opportunities will be explored during the networking session. Aims: Give companies the chance to present technological advances in the field of healthcare diagnostics Provide a forum to discuss visionary ideas, bottlenecks and solutions to some of the major data-driven challenges  Inform participants about ELIXIR resources and create a space for networking between industry and academia. Target audience: Researchers in academia and industry interested in the data-driven health care sector Large and small companies that develop services for bio-data management and analysis Venture capital Preliminary programme: (detailed programme will be announced soon) Two Keynote talks Two Sessions of presentations from academia and industry Flash talk session Networking session *Virtual option: streaming of the talks and Slido questions for the first two sessions in the morning only. 2022-09-22 10:00:00 UTC 2022-09-22 19:00:00 UTC Hotel Meliã Sitges, Barcelona, Spain Hotel Meliã Sitges Barcelona Spain 08870 [] [] [] meetings_and_conferences [] []

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