Tools for Systems biology modeling and data exchange: COPASI, CellNetAnalyzer, SABIO-RK, FAIRDOMHub/SEEK 2022
9 - 11 August 2022
Heidelberg, GermanyTools for Systems biology modeling and data exchange: COPASI, CellNetAnalyzer, SABIO-RK, FAIRDOMHub/SEEK 2022 https://www.denbi.de/training/1409-tools-for-systems-biology-modeling-and-data-exchange-copasi-cellnetanalyzer-sabio-rk-fairdomhub-seek-2022 http://tess.elixir-uk.org/events/tools-for-systems-biology-modeling-and-data-exchange-copasi-cellnetanalyzer-sabio-rk-fairdomhub-seek-2022 During this 3-day course, attendees will learn basic techniques for modeling of biochemical networks including data access and storage due to the FAIR principles. The first day introduces kinetic modeling techniques which will be illustrated and exercised with COPASI. The second day continues with principles of stoichiometric and constraint-based modeling coupled with hands on exercises using CellNetAnalyzer and a demonstration of CNApy. The third day SABIO-RK is used as a resource for kinetic data and FAIRDOM Hub/SEEK is introduced as a data and model management platform fitted to the needs of systems biologists. The hands on exercises throughout the three days will ensure that attendees become familiar with the software tools and with analyzing, creating, editing, importing, simulating and storing biochemical networks. 2022-08-09 09:00:00 UTC 2022-08-11 17:00:00 UTC de.NBI /ELIXIR-DE BioQUANT, Heidelberg, Germany BioQUANT Heidelberg Germany 69120 University of Heidelberg, BioQUANT Frank T. Bergmann (firstname.lastname@example.org)  ResearcherModellerStudents workshops_and_courses  
ELIXIR at ECCB 2022
12 - 21 September 2022
Barcelona, SpainELIXIR at ECCB 2022 https://www.elixir-europe.org/events/elixir-eccb-2022 http://tess.elixir-uk.org/events/elixir-at-the-eccb-2022 The 21st European Conference on Computational Biology (ECCB 2022) has the theme "Planetary Health and Biodiversity". This year the conference runs 12 - 21 September and is organised by the Spanish National Bioinformatics Institute (INB/ELIXIR-ES) and the Barcelona Supercomputing Center (BSC). 12 - 16 September: online workshops 18 - 21 September: a four-day conference, with keynote speakers, talks, posters and workshops ELIXIR will be present at this year's ECCB conference with the ELIXIR Communities Track on Monday and Tuesday 19 - 20 September, and workshops on Sunday 18 September. You can find details about the conference, including how to register, on the ECCB 2022 website. Programme for the ELIXIR track ELIXIR Workshop Sunday 18 September, time tbc FAIR applied: a practical FAIRification guide for life science data from FAIRplus Tony Burdett, Ibrahim Emam, Nick Juty, Philippe Rocca-Serra, Danielle Welter and Fuqi Xu More information can be found here. ELIXIR Session 1 Monday 19 September, 10:00-11:00 Identifying resources and exploring synergies between the ELIXIR 3D-Bioinfo, Proteomics and IDP Communities Emmanuel Levy, Christine Orengo, Nathalie Reuter, Sameer Velankar, Shoshana Wodak, Norman Davey, Zsuzsa Dosztanyi, Damiano Piovesan, Silvio Tosatto, Eva Csosz, Julien Marcoux, Lennart Martens, Pathmanaban Ramasamy, Juan Antonio Vizcaino, Massimiliano Bonomi and Wim Vranken Using the IDP-KG to enable IDPcentral information on submission Alasdair Gray, Ivan Mičetić and Damiano Piovesan AHoJ: rapid, tailored search and retrieval of apo and holo protein structures Christos P. Feidakis, Radoslav Krivak, David Hoksza and Marian Novotný ELIXIR Session 2 Monday 19 September, 11:30-12:30 Open source genome-scale metabolic models: why and how Mihail Anton, Barbara Szomolay and Vitor A P Martins dos Santos Genome-wide metabolic annotation for Methanocaldococcus (Methanococcus) jannaschii, the first member of the Archaea to be sequenced a quarter of a century ago Ismini Baltsavia, George Stamoulos, Konstantinos Tziavara, Alexandros Dermaris, Ioannis Iliopoulos, Ron Caspi, Peter D. Karp, Nikos C. Kyrpides and Christos A. Ouzounis Rare disease specific FAIR Maturity Indicators Núria Queralt Rosinach, Rajaram Kaliyaperumal, Annika Jacobsen, Mark Wilkinson, Marc Hanauer and Marco Roos ELIXIR Session 3 Tuesday 20 September, 10:00-11:00 Setting the scene: Beyond COVID-19 - European preparedness for infectious disease outbreaks Katharina Lauer Pathogen Data Sharing and Workflows at the ENA Colman O’Cathail (EBI/COVID19 Data Portal) Using COVID-19 data genomics and sharing to set a new future standard Bas Oude Munnink (Erasmus MC/VEO) Fully transparent viral genomics data analysis and sharing for everyone using public infrastructure Wolfgang Maier (Universitaet Freiburg/Galaxy) ELIXIR Session 4 Tuesday 20 September, 11:30-12:30 The ELIXIR Machine Learning Focus Group: achievements and the road ahead Silvio Tosatto and Fotis Psomopoulos ELIXIR Biodiversity Community - "Biodiversity data” aims and challenges Toni Gabaldón, Josephine Burgin and Robert Waterhouse Federated EGA (title tbc) Jordi Rambla Register for ECCB 2022 Submit your abstract to the ELIXIR Communities Track Track chair: Katharina Heil, ELIXIR We invite submissions of abstracts to the ELIXIR Communities Track at ECCB2022. The aim of the ELIXIR Communities Track is to showcase the latest outputs and services emerging from ELIXIR’s Communities. Submissions are open to ELIXIR Community members. They should highlight services and activities of the ELIXIR Community. Presentations should be 15 minutes and will be followed by a maximum of five-minute discussions. Presenters are encouraged to demonstrate concrete services and outputs and show clearly the benefit of their resource or activity to the ECCB audience. Accepted submissions will be presented in one of the four ELIXIR Communities Track sessions at the conference. Authors of accepted submissions will be invited to publish their presentations on the ELIXIR F1000Research Gateway. Call opens: 16 May 2022 Call closes: 29 May 2022 Authors will be notified of acceptance by 2 June 2022. Review Criteria All submissions will be evaluated according to the following criteria: Relevance, interest, and value of the topic to conference attendees. Relevance to the overall themes of ECCB2022: Data, Genome, Genes, Proteins, Systems. Relevance to ELIXIR activities. The ultimate decision of acceptance for an ELIXIR Communities Track lies with the Track Chair and ELIXIR Programme Committee. Accepted presenters are required to deliver the presentation themselves, and must register to attend the conference. Contacts For the ELIXIR Communities Track: email@example.com For general questions about the conference: firstname.lastname@example.org 2022-09-12 09:00:00 UTC 2022-09-21 17:00:00 UTC Hotel Meliã Sitges, Barcelona, Spain Hotel Meliã Sitges Barcelona Spain      
ELIXIR Innovation and SME Forum: Data driven innovation in healthcare diagnostics
22 September 2022
Barcelona, SpainELIXIR Innovation and SME Forum: Data driven innovation in healthcare diagnostics https://www.elixir-europe.org/events/elixir-innovation-and-sme-forum-data-driven-innovation-healthcare-diagnostics http://tess.elixir-uk.org/events/elixir-innovation-and-sme-forum-data-driven-innovation-in-healthcare-diagnostics The Innovation and SME Forum on Data driven innovation in healthcare diagnostics is a one-day event, which will be organised in hybrid mode*. The Forum is co-located with ECCB2022 and aims to bring together researchers from large, medium and small companies and academia who work on services for data management and sharing, as well as people involved in national healthcare initiatives. This event contains a mix of high-level speakers from academia and industry and interactive sessions to discuss and interact with other companies and ELIXIR partners on the following themes: Scientific achievements in structural genetics, multigenetics, diagnostics of rare and infectious diseases Managing standards and ethics in new technologies Challenges in boosting Open Innovation in healthcare sector A specific session with Flash Talks, will give SMEs and Start-Ups the chance to introduce their work to a broad audience. Potential investment opportunities will be explored during the networking session. Aims: Give companies the chance to present technological advances in the field of healthcare diagnostics Provide a forum to discuss visionary ideas, bottlenecks and solutions to some of the major data-driven challenges Inform participants about ELIXIR resources and create a space for networking between industry and academia. Target audience: Researchers in academia and industry interested in the data-driven health care sector Large and small companies that develop services for bio-data management and analysis Venture capital Preliminary programme: (detailed programme will be announced soon) Two Keynote talks Two Sessions of presentations from academia and industry Flash talk session Networking session *Virtual option: streaming of the talks and Slido questions for the first two sessions in the morning only. 2022-09-22 10:00:00 UTC 2022-09-22 19:00:00 UTC Hotel Meliã Sitges, Barcelona, Spain Hotel Meliã Sitges Barcelona Spain 08870    meetings_and_conferences  
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