Microbiome Visualization with Biome-Shiny
BioData.pt Crash Course
Date: 31 January 2020 @ 09:30 - 17:30
Timezone: Lisbon
BioData.pt Crash Course: Microbiome Visualization with Biome-Shiny is an introductory one-day workshop seeking to provide users with the knowledge to create, analyze and visualize microbiome data.
The course consists of two parts: the first part, is an introduction to, and hands-on demonstration of, the DADA2 pipeline, which will be used to process a training dataset into a file that can be analyzed through the Biome-Shiny tool; the second part, employs the Biome-Shiny GUI to explore the obtained dataset's microbial community composition, as well as the alpha- and beta-diversity of the dataset, and download their results for later use.
By the end of this course, participants should be able to apply the DADA2 algorithm to process their own sequenced reads, as well as employ Biome-Shiny as a GUI-based solution to explore their data and produce a final report.
Contact: info@biodata.pt
Venue: Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande
City: Oeiras
Country: Portugal
Organizer: BioData.pt / Instituto Gulbenkian de Ciência
Host institutions: Instituto Gulbenkian de Ciência, Biodata.pt - Elixir's portuguese node of the european projec
Eligibility:
- First come first served
Target audience: PhD students and post-docs who want to learn the basics of microbiome analysis in Bioinformatics, and have little knowledge of programming.
Event types:
- Workshops and courses
Scientific topics: Metagenomics
Activity log