Workshops and courses

ELIXIR node event Accessing fine-grained Molecular Interactions data with IntAct

View event

Date: 25 January 2023

This webinar will provide an introduction to molecular interactions and how to find these through the molecular interaction database IntAct.  We will demonstrate examples of how you can search for interaction data using advanced filter options, how to create molecular interaction networks using our network viewer based on Cytoscape.js and how to download the data for further analysis. We will show how to access mutation data affecting the outcome of molecular interactions.

We will also provide a brief overview of two other resources, PSICQUIC and IMEx, that integrate molecular interactions from several sources.

 

Contact: Ajay Mishra - webinars@ebi.ac.uk

Keywords: UniProt: The Universal Protein Resource, Proteins (proteins), Fermentation, Microbial ecosystems webinar, Antimicrobial resistance, Ensembl, DNA & RNA (dna-rna), BLAST, Open Targets Platform, Cross domain (cross-domain), Chemical biology (chemical-biology), Drug discovery, Drug target identification, UniRule, ARBA, Automated annotation, MetaboLights: Metabolomics repository and reference database, Chemical Entities of Biological Interest, ChEBI, Metabolites, Molecular building blocks of life, Human Cell Atlas Data Coordination Platform, Single-cell transcriptomics, HCA data portal, Programmatic access, API, Python, Complex Portal, macromolecular assembly, InterPro, Boolean modelling, Europe PubMed Central, Literature (literature), Open access, Protein Data Bank in Europe - Knowledge Base, 3D structure, AlphaFold Database, DeepMind, Artificial intelligence, AI, Structure prediction, cancer, Boolean, Ensembl Genomes, European Nucleotide Archive, Data archive, Raw sequencing data, RNAcentral, Non-coding RNA, ncRNA, GPU, Data protection, Job dispatcher, Bioimage analysis resource, Accessibility, Missense variation, Biostatistics, Rfam, non-coding RNA, Infernal software, Sequence annotation, Root microbiome, Abiotic stress, land management, Plant genotype, Plant webinar series, HPC, database development, cross-linked databases, Plant database, data infrastructure, Plant breeding, Data standards, data managemnet, data sharing, Hyb-Seq method, Flowering plants, Crop improvement, Pangenomics, Pangenomes, Virtual humans, Drug-target identification, plant-microbe interactions, Spatial transcriptomics, Plant research, Drug targets, Machine learning, Mathematical modelling, plant science, Data integration, plant-environment interaction, Phenotyping, field phenotyping, Deep phenotyping, EOSC-Life, NHGRI-EBI GWAS Catalog, clinical data, genome-wide association, plants, European Variation Archive, EVA, Variant clusters, Variant data annotation, Constraint-based metabolic modelling, UniProt knowledgebase, protein variant impact, disease-associated protein variants, Bioethics, FAIR principles, ELSI, cohort data, translational research, BioModels database, Mathematical modeling, Reproducibity, Systems biology models, workflows, federated analysis, polygenic risk scores, IntAct Molecular Interaction Database, PSICQUIC, IMEx, Complex portal

Organizer: European Bioinformatics Institute (EBI)

Host institutions: EMBL-EBI

Capacity: 1000

Event types:

  • Workshops and courses

Scientific topics: Molecular interactions, pathways and networks, Protein interactions

Activity log