High-throughput sequencing data analysis requires new technical competencies and HPC is one of them. SIB has developed an e-learning module in HPC, as part of the ELIXIR-EXCELERATE project. e-learning has the potential to reach a wider audience, in any location and any time, and can be used...
Keywords: High performance computing, high-performance computing
Resource type: Tutorial, Slideshow, e-learning
High Performance Computing (HPC) in Life Scienceshttps://edu.sib.swiss/course/view.php?name=HPCelhttp://tess.elixir-uk.org/materials/high-performance-computing-hpc-in-life-sciencesHigh-throughput sequencing data analysis requires new technical competencies and HPC is one of them. SIB has developed an e-learning module in HPC, as part of the ELIXIR-EXCELERATE project. e-learning has the potential to reach a wider audience, in any location and any time, and can be used either as the electronic component of a blended training format or as a self-running learning product.Robin EnglerVassilios IoannidisGrégoire RossierVolker FlegelHeinz StockingerBiologyBioinformaticsComputer scienceHigh performance computing, high-performance computingPhD studentsAll postgraduatesLife Science Researchers
This self-learning tutorial aims to present the UNIX environment and to provide the most basic commands to users with no or very little UNIX knowledge.
The examples are taken from various Biological fields but have been chosen carefully to be easily accessible to a wide audience.
At the end of...
Keywords: Problem based learning, Programming, Unix
Resource type: e-learning
UNIX Fundamentalshttps://www.mygoblet.org/training-portal/materials/unix-fundamentalshttp://tess.elixir-uk.org/materials/unix-fundamentals-35adf82d-ae32-449d-9627-43b5d18da8ccThis self-learning tutorial aims to present the UNIX environment and to provide the most basic commands to users with no or very little UNIX knowledge.
The examples are taken from various Biological fields but have been chosen carefully to be easily accessible to a wide audience.
At the end of the course, participants are expected to be able to:
Have some understanding on UNIX systems
Navigate through the UNIX filesystem
Execute and understand some UNIX process commands
Correctly set file permissions
Perform basic file management
Participants are encouraged to follow the tutorial sections sequentially.
The tutorial content is sometimes an oversimplification of the Truth - yes, we know!
Due to the diversity of computer systems, we will just assume that participants do have access to a terminal.
For help, please contact your IT support - or a good friend!Authors are affiliated to the SIB Swiss Institute of Bioinformatics:
Vassilios IoannidisWith some content provided by Frédéric Schütz, Volker Flegel and Heinz StockingerContent integration by Grégoire Rossier and Vassilios IoannidisVassilios IoannidisGrégoire RossierVolker FlegelHeinz StockingerFrédéric SchützProblem based learning, Programming, UnixBench biologistsClinical ScientistsGraduate Studentsbeginner bioinformaticiansbiocurators2014-01-132017-10-09
