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Using ASAP for Single-Cell Analysis
• beginnergenes and genomes biomarkers experimental biology functional genomics next generation sequencing population genomics single-cell biology training transcriptomics bart deplancke group -
Introduction to Containers and Snakemake for Reproducible Research
• beginnercontainer data management high-performance computing reproducibility workflows marc robinson-rechavi group training -
Computer Software, workflow
How to use V-pipe (SARS-CoV-2 data)
• beginnerVirology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling -
Training materials
Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide
• beginnerBioinformatics for schools, basic bioinformatics, SARS-CoV-2 pandemic, genome analysis, protein sequence analysis, protein structure analysis, virus variants, spike protein, training material -
e-learning
BLAST and multiple sequence alignment (MSA) programs
• beginnerSequence analysis Blast Multiple sequence alignment -
BLAST and multiple sequence alignment (MSA) programs
• beginnerBlast E learning Multiple sequence alignment -
e-learning
UNIX Fundamentals
• beginnerComputer science Problem based learning Programming Unix -
Tutorial, Slideshow, e-learning
High Performance Computing (HPC) in Life Sciences
• beginnerComputer science Bioinformatics Biology High performance computing high-performance computing -
e-learning
ISMARA: A tool to infer genome-wide regulatory interactions
• beginnerSystems biology Gene regulation Transcription factors and regulatory sites Computational modelling -
e-learning
Cellosaurus : A resource on cell lines
• beginnerBiosciences Experimental design and studies basic research Reproducibility cell line -
e-learning
neXtProt : Exploring human proteins
• beginnerProteins Proteomics Proteins (proteins) human -
Biodiversity bioinformatics: from large-scale phylogenomics to gene families and functions
• beginnerbiodiversity non model organisms evolution and phylogeny genes and genomes comparative genomics evolutionary biology training marc robinson-rechavi group robert waterhouse group christophe dessimoz group -
Vital-IT Infrastructure Usage
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Introduction to Statistics with Python
• beginnerprogramming biostatistics torsten schwede & thierry sengstag group -
e-learning
Explore and Visualize Your Data with Python
•• intermediateData visualisation Bioinformatics Python Data analysis -
Introduction to 3D-Structure Visualization and Homology Modeling using the Swiss-Model Workspace
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Best Practices in Programming
•• intermediateprogramming reproducibility bernd rinn group -
R Basics Quiz
• beginner -
Gene Expression made Useful Easily: Tools and Database of Bgee
• beginnerBgee genes and genomes evolution and phylogeny services and resources comparative genomics database curation data management data visualisation transcriptomics training marc robinson-rechavi group -
ViralZone
Phylogenetics of animal viral pathogens
• beginnerAnimal pathogens E learning Phylogenetics -
First Steps with UNIX in Life Sciences
• beginnerprogramming,training programming,training,mark ibberson group -
Statistics and Machine Learning for Life Sciences
•• intermediatetraining biostatistics data mining machine learning torsten schwede & thierry sengstag group -
Introduction to Machine Learning with Python
• beginnerdata mining machine learning training mark ibberson group torsten schwede & thierry sengstag group -
Mining enzyme data in UniProtKB using Rhea
• beginnerbiochemistry data mining lipids ontology proteins and proteomes training alan bridge group -
Video, E-learning
FAIR principles in practice for health data
• beginnerComputer science Data management FAIR data Medical informatics Standardisation and normalisation Design Clinical data RDF Knowledge graph Semantic framework FAIR Findability Accessibility Interoperability Reusability -
Introduction to Viral Bioinformatics
• beginnergenes and genomes infectious disease medicine and health services and resources training -
neXtProt : Exploring human proteins
-
ISMARA: A tool to infer genome-wide regulatory interactions
-
Querying SIB resources with SPARQL
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First Steps with Python in Life Sciences
• beginnerdata management data visualisation programming reproducibility training torsten schwede & thierry sengstag group mark ibberson group
Activity log