NGS Registry

GitLab repository and its Wiki companion containing a collection of training materials for teaching next generation sequencing data analysis.

NGS Registry http://tess.elixir-uk.org/content_providers/ngs-registry GitLab repository and its Wiki companion containing a collection of training materials for teaching next generation sequencing data analysis.
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ChIP-Seq

ChIP-Seq

Keywords

ChIP-Seq, Experimental-design, QC, ChIP-Seq-QC, Data-format, Alignment, Peak-calling, Differential-binding, Annotation

Global learning objectives

  • Describe the ChIP-Seq experimental and analysis workflow
  • Apply suitable experimental design
  • Apply suitable quality...

Keywords: ChIP-Seq, Experimental-design, QC, ChIP-Seq-QC, Data-format, Alignment, Peak-calling, Differential-binding, Annotation

NGS introduction to file formats

NGS introduction to file formats

Keywords

HTS-introduction, FASTQ, BAM, VCF, WIG, CRAM, GFF3

Authors

  • Frederik Coppens (@frcop)

Type

  • Lecture

Description

This sub-module gives an overview of the most used file formats in Next Generation Sequencing analysis

Aims

The...

Keywords: HTS-introduction, FASTQ, BAM, VCF, WIG, CRAM, GFF3

Introduction to NGS and RNA-seq

Introduction to NGS and RNA-seq

Keywords

HTS-introduction, Data-format, Alignment, Differential-expression, Feature-summarisation, QC

Details

### Venue
Plant Systems Biology
October 27th, 2014

Organisation

  • Plant Systems Biology
  • Frederik Coppens (@frcop)

Top | Keywords |...

Keywords: HTS-introduction, Data-format, Alignment, Differential-expression, Feature-summarisation, QC

RNA-Seq Analysis with Biocluster and R

RNA-Seq Analysis with Biocluster and R

Keywords

RNA-Seq, Alignment, Annotation, BAM, Differential-expression, Exploratory-analysis, Expression-estimation, FASTA, FASTQ, Feature-summarisation, Pre-processing, QC, Statistical-model

Authors

  • Jenny Drnevich @jenny
  • Radhika Khetani...

Scientific topics: RNA-Seq

Keywords: RNA-Seq, Alignment, Annotation, BAM, Differential-expression, Exploratory-analysis, Expression-estimation, FASTA, FASTQ, Feature-summarisation, Pre-processing, QC, Statistical-model

RNA-Seq

RNA-Seq

RNA-Seq is an high throughput sequencing method commonly used to assess gene expression.

Keywords

Alignment, Annotation, BAM, De-novo-transcriptome-assembly, Differential-expression, Exploratory-analysis, Expression-estimation, FASTA, FASTQ, Feature-summarisation, Pre-processing, QC,...

EMBO High Throughput Sequencing Data Analysis, Cambridge, UK, 2014

EMBO High Throughput Sequencing Data Analysis, Cambridge, UK, 2014

Keywords

FASTQ, GFF3, BAM, Populus-tremula, RNA-Seq, Pre-processing, QC, Alignment, Annotation, Expression-estimation, Differential-expression, R-programming

Details

The material described here further corresponds to the...

Scientific topics: RNA-Seq

Keywords: FASTQ, GFF3, BAM, Populus-tremula, RNA-Seq, Pre-processing, QC, Alignment, Annotation, Expression-estimation, Differential-expression, R-programming

RNA-seq module Frederik Coppens

RNA-seq module Frederik Coppens

Keywords

HTS-introduction

Authors

  • Frederik Coppens, @frcop

Top | Keywords | Authors | Description | Aims | Prerequisites | Target audience | Learning objectives | Materials | Data | Technical requirements | Literature references

Description

...

Keywords: HTS-introduction

Day 1 - RNA-Seq Analysis

Day 1 - RNA-Seq Analysis

Keywords

Alignment, BAM, FASTA, FASTQ, QC

Authors

Type

  • Both

Description

Day 1 starts at the very beginning of a typical RNA-Seq workflow, explaining...

Keywords: Alignment, BAM, FASTA, FASTQ, QC

Material for the course RNA-seq data analysis with Chipster

Material for the course RNA-seq data analysis with Chipster

Keywords

RNA-Seq, FASTQ, QC, Pre-processing, Alignment, BAM, Expression-estimation, Feature-summarisation, Differential-expression, Statistical-model, Exploratory-analysis

Authors

  • Eija Korpelainen (@eija),...

Scientific topics: RNA-Seq

Keywords: RNA-Seq, FASTQ, QC, Pre-processing, Alignment, BAM, Expression-estimation, Feature-summarisation, Differential-expression, Statistical-model, Exploratory-analysis

Preprocessing RNA-Seq data

Preprocessing RNA-Seq data

Keywords

Pre-processing

Authors

Bert Overduin (@bert)

Type

  • Lecture
  • Practical

Description

Quality assessment and preprocessing of RNA-seq data. Description of FastQ format

Aims

Give an overview of preprocessing of RNA-seq data

...

Keywords: Pre-processing

ChIP-seq analysis using R - Practical

ChIP-seq analysis using R - Practical

Keywords

ChIP-Seq, Peak-calling, Differential-binding, Visualisation, Annotation, Homo-sapiens, R-programming

Authors

  • Bori Mifsud
  • Kathi Zarnack

Type

  • Both

Description

ChIP-seq is the most commonly used technique to study binding...

Keywords: ChIP-Seq, Peak-calling, Differential-binding, Visualisation, Annotation, Homo-sapiens, R-programming

Exploratory analysis and downstream analysis

Exploratory analysis and downstream analysis

Keywords

Statistical-model, Exploratory-analysis

Authors

Charlotte Soneson (@charlotte), charlottesoneson@gmail.com

Type

  • Lecture

Description

This lecture gives an overview of exploratory analysis (clustering) and supervised...

Keywords: Statistical-model, Exploratory-analysis

Introduction to R and Bioconductor lecture

Introduction to R and Bioconductor lecture

Keywords

R-programming

Authors

  • Jenny Drnevich (@jenny)

Type

  • Lecture

Description

This lecture gives an overview of the R and Bioconductor projects, plus the basics of R object types and programming language structure.

Aims

...

Keywords: R-programming

ChIP-seq analysis using R - Quality Control

ChIP-seq analysis using R - Quality Control

Keywords

ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

Authors

  • Anna Poetsch

Type

  • Practical

Description

This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will...

Scientific topics: RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

Guide to R swirl interactive lessons

Guide to R swirl interactive lessons

Keywords

R-programming

Authors

  • Jenny Drnevich (@jenny)

Type

  • Handout

Description

This handout describes how to download the swirl package and start the basic interactive lessons to learn R.

Aims

Have students be able to practice...

Keywords: R-programming

NGS introduction to sequencing platforms

NGS introduction to sequencing platforms

Keywords

HTS-introduction

Authors

  • Frederik Coppens (@frcop)

Type

  • Lecture

Description

This sub-module gives an overview of the most used sequencing platforms and their applications.

Aims

The aim of this sub-module is to make...

Keywords: HTS-introduction

Nicolas Delhomme - Bastian Schiffthaler - October 2014 EMBO course material

Nicolas Delhomme - Bastian Schiffthaler - October 2014 EMBO course material

Keywords

FASTQ, GFF3, BAM, Populus-tremula, RNA-Seq, Pre-processing, QC, Alignment, Annotation, Expression-estimation, Differential-expression, R-programming

Authors

  • Nicolas Delhomme (@delhomme)
  • Bastian...

Scientific topics: RNA-Seq

Keywords: FASTQ, GFF3, BAM, Populus-tremula, RNA-Seq, Pre-processing, QC, Alignment, Annotation, Expression-estimation, Differential-expression, R-programming

Prerequisite

Prerequisite

Background and prerequisite information necessary for all other topics

Keywords

Unix, Linux, R-programming, Statistics

Global learning objectives

  • Review the necessary background knowledge to address the other topics

Modules

Unix/Linux (Essential)

  • Develop a...

Scientific topics: Statistics and probability

Keywords: Unix, Linux, R-programming, Statistics

RNA-seq module Eija Korpelainen

RNA-seq module Eija Korpelainen

Keywords

FASTQ, QC, Pre-processing, Alignment, BAM, Expression-estimation, Feature-summarisation, Differential-expression, Statistical-model, Exploratory-analysis

Authors

  • Eija Korpelainen, @eija

Top | Keywords | Authors | Description | Aims |...

Keywords: FASTQ, QC, Pre-processing, Alignment, BAM, Expression-estimation, Feature-summarisation, Differential-expression, Statistical-model, Exploratory-analysis

Introduction to RNA-seq analysis 2014

Introduction to RNA-seq analysis 2014

Keywords

Alignment, Differential-expression, Feature-summarisation, Pre-processing, QC

Authors

Frederik Coppens (@frcop)

Type

  • Lecture

Description

This lecture gives an overview how to perform an RNA-seq experiment. A general RNA-seq...

Keywords: Alignment, Differential-expression, Feature-summarisation, Pre-processing, QC

ChIP-seq analysis using R - File formats and QC

ChIP-seq analysis using R - File formats and QC

Keywords

ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

Authors

  • Anna Poetsch

Type

  • Lecture

Description

This lecture introduces the file formats of sequencing data before alignment and covers the general quality...

Scientific topics: RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

Example “Variant Calling”

Example “Variant Calling”

TITLE: One day variant calling module

## AUTHOR: Chiara Batini
## DESCRIPTION:
Comparing genome variation among populations or looking disease genotypes is a complex task. Finding the variants that illustrate these differences is the first step in understanding...

Day 2 - RNA-Seq Analysis

Day 2 - RNA-Seq Analysis

Keywords

Alignment, BAM, FASTA, FASTQ, QC, Exploratory-analysis, Feature-summarisation, Pre-processing

Authors

Type

  • Both

Description

Day 2 continues...

Keywords: Alignment, BAM, FASTA, FASTQ, QC, Exploratory-analysis, Feature-summarisation, Pre-processing

ChIP-seq analysis using R

ChIP-seq analysis using R

Keywords

ChIP-Seq, Experimental-design, QC, Data-format, Alignment, Peak-calling, Differential-binding, Visualisation, Annotation

Authors

  • Anna Poetsch
  • based partially on material from Bori Mifsud and Ernest Turro

Top | Keywords | Authors | Description |...

Keywords: ChIP-Seq, Experimental-design, QC, Data-format, Alignment, Peak-calling, Differential-binding, Visualisation, Annotation

ChIP-seq analysis using R - Experimental design and peak calling.

ChIP-seq analysis using R - Experimental design and peak calling.

Keywords

ChIP-Seq, Experimental-design, Peak-calling, Visualisation

Authors

  • Anna Poetsch
  • based partially on material from Bori Mifsud

Type

  • Lecture

Description

This lecture is an introduction to...

Keywords: ChIP-Seq, Experimental-design, Peak-calling, Visualisation

Exercises for the course RNA-seq data analysis with Chipster

Exercises for the course RNA-seq data analysis with Chipster

Keywords

FASTQ, QC, Pre-processing, Alignment, BAM, Expression-estimation, Feature-summarisation, Differential-expression, Statistical-model, Exploratory-analysis

Authors

...

Keywords: FASTQ, QC, Pre-processing, Alignment, BAM, Expression-estimation, Feature-summarisation, Differential-expression, Statistical-model, Exploratory-analysis

Intro to R and Bioconductor

Intro to R and Bioconductor

Keywords

Prerequisite, R-programming

Authors

  • Jenny Drnevich @jenny

Top | Keywords | Authors | Description | Aims | Prerequisites | Target audience | Learning objectives | Materials | Data | Technical requirements | Literature references

...

Keywords: Prerequisite, R-programming

Introduction to R and Bioconductor lecture

Introduction to R and Bioconductor lecture

Keywords

R-programming

Authors

  • Jenny Drnevich (@jenny)

Type

  • Handout

Description

This reference handout goes over how to read and parse a line of complex R code.

Aims

Highlight the main language structure and important...

Keywords: R-programming

Tutorial

Tutorial

Keywords

FASTQ, GFF3, BAM, Populus-tremula, RNA-Seq, Pre-processing, QC, Alignment, Annotation, Expression-estimation, R-programming

Authors

  • Nicolas Delhomme (@delhomme)
  • Bastian Schiffthaler (@bastian)

Type

  • Practical

| Top | Keywords | Authors | Type |...

Scientific topics: RNA-Seq

Keywords: FASTQ, GFF3, BAM, Populus-tremula, RNA-Seq, Pre-processing, QC, Alignment, Annotation, Expression-estimation, R-programming

RNA-seq module Frederik Coppens

RNA-seq module Frederik Coppens

Keywords

FASTQ, Alignment, BAM, Differential-expression, Statistical-model, Exploratory-analysis

Authors

  • Benilton Carvalho @benilton

Top | Keywords | Authors | Description | Aims | Prerequisites | Target audience | Learning objectives | Materials |...

Keywords: FASTQ, Alignment, BAM, Differential-expression, Statistical-model, Exploratory-analysis

Differential expression analysis on the Robinson, Delhomme et al. dataset.

Differential expression analysis on the Robinson, Delhomme et al. dataset.

Keywords

RNA-Seq, Differential-expression, R-programming, Statistical-model

Authors

  • Bastian Schiffthaler (@bastian)
  • Nicolas Delhomme (@delhomme)

Type

  • Practical

| Keywords | Authors | Type |...

Scientific topics: RNA-Seq

Keywords: RNA-Seq, Differential-expression, R-programming, Statistical-model

RNA-seq module Frederik Coppens

RNA-seq module Frederik Coppens

Keywords

RNA-Seq, Alignment, BAM, FASTQ, Feature-summarisation, Pre-processing, QC

Authors

  • Frederik Coppens, @frcop

Top | Keywords | Authors | Description | Aims | Prerequisites | Target audience | Learning objectives | Materials | Data | Technical...

Scientific topics: RNA-Seq

Keywords: RNA-Seq, Alignment, BAM, FASTQ, Feature-summarisation, Pre-processing, QC

Lecture slides for the course RNA-seq data analysis with Chipster

Lecture slides for the course RNA-seq data analysis with Chipster

Keywords

FASTQ, QC, Pre-processing, Alignment, BAM, Expression-estimation, Feature-summarisation, Differential-expression, Statistical-model, Exploratory-analysis

Authors

  • Eija Korpelainen (@eija),...

Keywords: FASTQ, QC, Pre-processing, Alignment, BAM, Expression-estimation, Feature-summarisation, Differential-expression, Statistical-model, Exploratory-analysis

Alignment of RNA-Seq data

Alignment of RNA-Seq data

Keywords

Alignment

Authors

Bert Overduin (@bert)

Type

  • Lecture
  • Practical

Description

Focus on BAM format

Aims

Provide a worked example of aligning your reads to a reference genome

Prerequisites

  • Introduction to NGS
  • Linux *...

Keywords: Alignment

ChIP-seq analysis using R

ChIP-seq analysis using R

Keywords

ChIP-Seq, Experimental-design, Peak-calling, Differential-binding, Visualisation, Annotation, Homo-sapiens, R-programming

Authors

  • Bori Mifsud
  • Kathi Zarnack

Top | Keywords | Authors | Description | Aims | Prerequisites | Target audience |...

Keywords: ChIP-Seq, Experimental-design, Peak-calling, Differential-binding, Visualisation, Annotation, Homo-sapiens, R-programming

ChIP-seq analysis using R - Practical talk

ChIP-seq analysis using R - Practical talk

Keywords

ChIP-Seq, Peak-calling, Differential-binding, Visualisation, Annotation, Homo-sapiens, R-programming

Authors

  • Bori Mifsud
  • Kathi Zarnack

Type

  • Both

Description

ChIP-seq is the most commonly used technique to study...

Keywords: ChIP-Seq, Peak-calling, Differential-binding, Visualisation, Annotation, Homo-sapiens, R-programming

Differential expression analysis

Differential expression analysis

Keywords

Differential-expression, Statistical-model

Authors

Charlotte Soneson (@charlotte), charlottesoneson@gmail.com

Type

  • Lecture

Description

This lecture covers the process from count matrix to statistical analysis results...

Keywords: Differential-expression, Statistical-model

ChIP-seq analysis using R - Mapping and file formats

ChIP-seq analysis using R - Mapping and file formats

Keywords

ChIP-Seq, RNA-Seq, Alignment, Data-format, Assembly, QC

Authors

  • Anna Poetsch
  • based partially on material from Ernest Turro (University of Cambridge)

Type

  • Lecture

Description

This lecture introduces the...

Scientific topics: Sequence assembly, RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, Alignment, Data-format, Assembly, QC

Mapping Quality Control

Mapping Quality Control

Keywords

Alignment, BAM, QC

Authors

Bert Overduin (@bert)

Type

  • Lecture
  • Practical

Description

Perform QC on aligned data

Aims

Understand the importance of quality control aspects of alignment and perform the QC.

Prerequisites

*...

Keywords: Alignment, BAM, QC

Expression estimation

Expression estimation

Keywords

GFF3, BAM, Populus-tremula, RNA-Seq, Expression-estimation

Authors

  • Nicolas Delhomme (@delhomme)
  • Bastian Schiffthaler (@bastian)

Type

  • Lecture

Description

This introduces how to summarise short read alignments by the annotation of...

Scientific topics: RNA-Seq

Keywords: GFF3, BAM, Populus-tremula, RNA-Seq, Expression-estimation

Introduction to HTS

Introduction to HTS

General introduction to High Throughput Sequencing (HTS), detailing both
Next-Generation Sequencing (NGS) and 3rd Generation Sequencing platforms
and the related data formats.

Keywords

HTS-introduction

Global learning objectives

  • List commonly used sequencing...

Keywords: HTS-introduction

RNA-seq training PSB 2013

RNA-seq training PSB 2013

Keywords

Alignment, Differential-expression, Feature-summarisation, Pre-processing, QC

Authors

Frederik Coppens (@frcop)

Type

  • Lecture

Description

This lecture gives an overview how to perform an RNA-seq experiment. First, the Illumina sequencing...

Keywords: Alignment, Differential-expression, Feature-summarisation, Pre-processing, QC

Material provided by Charlotte Soneson

Material provided by Charlotte Soneson

Keywords

RNA-Seq, Differential-expression, Statistical-model, Exploratory-analysis

Authors

Top | Keywords | Authors | Description | Aims | Prerequisites | Target audience | Learning...

Scientific topics: RNA-Seq

Keywords: RNA-Seq, Differential-expression, Statistical-model, Exploratory-analysis

Statistics and RNA-Seq

Statistics and RNA-Seq

Keywords

FASTQ, Alignment, BAM, Differential-expression, Statistical-model, Exploratory-analysis

Authors

  • Benilton Carvalho @benilton

Top | Keywords | Authors | Description | Aims | Prerequisites | Target audience | Learning objectives | Materials | Data |...

Keywords: FASTQ, Alignment, BAM, Differential-expression, Statistical-model, Exploratory-analysis

Populus tremula shows no evidence of sexual dimorphism

Populus tremula shows no evidence of sexual dimorphism

Keywords

FASTQ, GFF3, BAM, Populus-tremula, RNA-Seq, Pre-processing, QC, Alignment, Annotation, Expression-estimation, Differential-expression

Authors

  • Nicolas Delhomme (@delhomme)
  • Robinson K.
  • Mähler N.
  • Bastian...

Scientific topics: RNA-Seq

Keywords: FASTQ, GFF3, BAM, Populus-tremula, RNA-Seq, Pre-processing, QC, Alignment, Annotation, Expression-estimation, Differential-expression

ChIP-seq analysis using R - Experimental design and peak calling.

ChIP-seq analysis using R - Experimental design and peak calling.

Keywords

ChIP-Seq, Experimental-design, Peak-calling, Visualisation

Authors

  • Bori Mifsud
  • Kathi Zarnack

Type

  • Lecture

Description

This lecture is an introduction to ChIP-seq experiments and data. It...

Keywords: ChIP-Seq, Experimental-design, Peak-calling, Visualisation

Variant-calling

Variant-calling

Comparing genome variation among populations or looking disease genotypes is a complex task. Finding the variants that illustrate these differences is the first step in understanding these population structures or genotype-phenotype relations.

Keywords

Alignment, Annotation,...

Keywords: Alignment, Annotation, BAM, BCF, De-novo-transcriptome-assembly, Exploratory-analysis, FASTQ, Pre-processing, QC, Statistical-model, Variant-calling, VCF

Quality Control

Quality Control

Keywords

FASTQ, RNA-Seq, Pre-processing, QC

Authors

  • Nicolas Delhomme (@delhomme)
  • Bastian Schiffthaler (@bastian)

Type

  • Lecture

Description

This is an introduction to the tools available for performing the technical QA of RNA-Seq data and to their...

Scientific topics: RNA-Seq

Keywords: FASTQ, RNA-Seq, Pre-processing, QC

Data objects for R practice codes

Data objects for R practice codes

Keywords

R-programming

Authors

  • Jenny Drnevich (@jenny)

Type

  • Data set

Description

This RData file contains small R objects to use in the introR.R practice questions

Aims

These codes aims to take the novice and turn them into a...

Keywords: R-programming

Annotation

Annotation

Keywords

GFF3, Populus-tremula, RNA-Seq, Annotation

Authors

  • Nicolas Delhomme (@delhomme)
  • Bastian Schiffthaler (@bastian)

Type

  • Lecture

Description

This introduces to the different sources of genomic and genic annotation and to their most commonly used...

Scientific topics: RNA-Seq

Keywords: GFF3, Populus-tremula, RNA-Seq, Annotation

Alignment

Alignment

Keywords

BAM, Populus-tremula, RNA-Seq, QC, Alignment

Authors

  • Nicolas Delhomme (@delhomme)
  • Bastian Schiffthaler (@bastian)

Type

  • Lecture

Description

Introduction to short-read alignments, including a general overview of existing methods...

Scientific topics: RNA-Seq

Keywords: BAM, Populus-tremula, RNA-Seq, QC, Alignment

Day 3 - RNA-Seq Analysis

Day 3 - RNA-Seq Analysis

Keywords

QC, Exploratory-analysis, Differential-expression, Statistical-model, Pre-processing

Authors

Type

  • Both

Description

Day 3 focuses on...

Keywords: QC, Exploratory-analysis, Differential-expression, Statistical-model, Pre-processing

Nicolas Delhomme and Bastian Schiffthaler

Nicolas Delhomme and Bastian Schiffthaler

Keywords

FASTQ, GFF3, BAM, Populus-tremula, RNA-Seq, Pre-processing, QC, Alignment, Annotation, Expression-estimation, Differential-expression, R-programming

Authors

  • @delhomme
  • @bastian

| Keywords | Authors | Description | Aims |...

Scientific topics: RNA-Seq

Keywords: FASTQ, GFF3, BAM, Populus-tremula, RNA-Seq, Pre-processing, QC, Alignment, Annotation, Expression-estimation, Differential-expression, R-programming

RNA-seq module Bert Overduin

RNA-seq module Bert Overduin

Keywords

RNA-Seq, Pre-processing, QC, Alignment

Authors

  • Bert Overduin, @bert

Top | Keywords | Authors | Description | Aims | Prerequisites | Target audience | Learning objectives | Materials | Data | Technical requirements | Literature references

...

Scientific topics: RNA-Seq

Keywords: RNA-Seq, Pre-processing, QC, Alignment

R/Bioconductor installation and upgrade guide

R/Bioconductor installation and upgrade guide

Keywords

R-programming

Authors

  • Jenny Drnevich (@jenny)

Type

  • stand-alone handout

Description

This handout describes how to download R and install add-on packages, both from CRAN and
Bioconductor. It also documents how to...

Keywords: R-programming

Introduction to R practice codes

Introduction to R practice codes

Keywords

R-programming

Authors

  • Jenny Drnevich (@jenny)

Type

  • Practical

Description

These codes give an overview of R object types and programming language structure.

Aims

These codes aims to take the novice and turn them into a...

Keywords: R-programming

Day 4 - RNA-Seq Analysis

Day 4 - RNA-Seq Analysis

Keywords

Exploratory-analysis, Differential-expression, Statistical-model, Annotation

Authors

Type

  • Both

Description

Day 4 focuses on the final steps...

Keywords: Exploratory-analysis, Differential-expression, Statistical-model, Annotation

ChIP-seq analysis using R - Quality Control Walkthrough

ChIP-seq analysis using R - Quality Control Walkthrough

Keywords

ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

Authors

  • Anna Poetsch

Type

  • Both

Description

This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We...

Scientific topics: RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

Edinburgh genomics introduction to RNA-seq data analysis

Edinburgh genomics introduction to RNA-seq data analysis

Global learning objectives

  • Performing RNA-Seq analysis
  • Being able to choose an appropriate strategy {Advanced}
  • Recognizing the challenges and pitfalls
  • Recognizing issues with the data
  • Troubleshooting issues with the data...

Guidelines for this folder

Purpose of this folder

The Courses folder contains markdown files describing a teaching event e.g.
see this example for an RNA-Seq course.

Structure of this folder

So far this folder has a flat structure. In the future, if it turns out to be
unmanageable, then a folder structure based on...

Found 0 upcoming events. Found 0 past events.