NBIS

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden

NBIS http://tess.elixir-uk.org/content_providers/nbis NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden /system/content_providers/images/000/000/071/original/Screenshot_2019-06-11_at_16.06.01.png?1560264937
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Human Protein Atlas (HPA) - Introductory YouTube video

On the Human Protein Atlas you can study in which tissues and cells your favorite protein is expressed. In this live demo from AACR, you can learn how to find tissue specific proteins, see IHC stainings of proteins in normal and cancer tissues and explore proteins expressed in the mouse

Scientific topics: Gene expression, Protein expression

Human Protein Atlas (HPA) - Introductory YouTube video http://tess.elixir-uk.org/materials/human-protein-atlas-hpa-introductory-youtube-video On the Human Protein Atlas you can study in which tissues and cells your favorite protein is expressed. In this live demo from AACR, you can learn how to find tissue specific proteins, see IHC stainings of proteins in normal and cancer tissues and explore proteins expressed in the mouse Gene expression Protein expression
NBIS Reproducible research course

The material available on these pages is produced and maintained for a course on how to make your data analyses reproducible. In particular, it covers: Data management Conda Snakemake Git Jupyter R Markdown Docker

Keywords: data management, Reproducibility, Data analysis

Resource type: Training materials

NBIS Reproducible research course http://tess.elixir-uk.org/materials/nbis-reproducible-research-course The material available on these pages is produced and maintained for a course on how to make your data analyses reproducible. In particular, it covers: Data management Conda Snakemake Git Jupyter R Markdown Docker Leif Wigge Rasmus Ågren John Sundh data management, Reproducibility, Data analysis bioinformaticians
Showing 2 upcoming events. Found 94 past events. View all results.
  • Integrative structural biology course

    22 August - 2 October 2022

    Lund, Gothenburg, Stockholm, Sweden

    Elixir node event
    Integrative structural biology course http://tess.elixir-uk.org/events/integrative-structural-biology-course Deadline for application: 23rd of May: https://www.lyyti.fi/reg/Integrative_Structural_Biology_Course_3770 The two week course is a joint effort between the three large-scale research infrastructures SciLifeLab, MAX IV and ESS and additional related platforms. The aim is to give an overview of the structural biology available at the research infrastructures in Sweden. The course will focus on understanding the sample requirements, the nature of structural information that can be obtained and how data from multiple structural biology methods can be combined using e.g. computational chemistry techniques. The course consists of lectures, key note speakers, modelling practicals and facility visits. In addition events allowing time for networking within the group of students, the teachers and other infrastructure personnel, contributing to an expanded professional network. Technologies/methods: *Macromolecular X-ray and neutron crystallography *Small angle X-ray and neutron scattering *Cryo-electron microscopy *Macromolecular nuclear magnetic resonance spectroscopy *Structural mass spectrometry *Modelling and Computational methods *Biophysical characterization Keynote speakers: We proudly present a number of exciting keynote speakers that will present scientific examples of how integrative structural biology techniques can be used to solve intriguing questions. Professor Poul Nissen, Aarhus University Professor Carmen Domene, University of Bath Postdoctoral researcher Hanna Barriga, Karolinska university Also we will be able to join in on the SciLifeLab “Annual lecture on Structural Biology” where Demis Hassabis will talk on using AI to accelerate scientific discovery. Lessons on modelling/computational methods: We will have several lectures on modelling and computational techniques for structural biology. Associate professor Lucie Delemotte, Integrating physics-based and evolutionary modelling to investigate the conformational dynamics of membrane proteins Professor Gunnar von Heijne, Different approaches to the study of cotranslational protein folding Professor Erik Lindahl, titel tbd Principal Research Engineer Claudio Mirabello, The protein structure prediction problem: from Anfinsen to AlphaFold. 2022-08-22 09:00:00 UTC 2022-10-02 17:00:00 UTC Infralife Onsite on three different locations across Sweden where the Swedish national Research Infrastructures, MaxIV, SciLifeLab and ESS are coming together to deliver a course on structural biology. The course will be held in Sweden, on site, between Aug 22 and Sept 2nd 2022. *Lund, 22 to 25 Aug *Gothenburg, 26 Aug *Stockholm, 29 Aug to 2 Sep, Lund, Gothenburg, Stockholm, Sweden Onsite on three different locations across Sweden where the Swedish national Research Infrastructures, MaxIV, SciLifeLab and ESS are coming together to deliver a course on structural biology. The course will be held in Sweden, on site, between Aug 22 and Sept 2nd 2022. *Lund, 22 to 25 Aug *Gothenburg, 26 Aug *Stockholm, 29 Aug to 2 Sep Lund, Gothenburg, Stockholm Sweden Sweden Sweden Structural biology Infralife Josefin Lundgren (Infralife coordinator), josefin.lundgren@scilifelab.se This InfraLife integrative structural biology course is organized with funding support from the Swedish research council, Lif, Excillum, NBIS, Xenocs, SwedNMR, Bruker and CryoNET. The course is open to scientists of all age from academia, health care and industry. Level approximately corresponding to PhD student or postdoc depending on experience. Applicants welcome from Sweden, the Nordics, and other countries. receptions_and_networkingworkshops_and_courses registration_of_interest Structural biologybioinformaticsTechnologycomputational methods
  • Introduction to Data Management practices (preliminary)

    11 - 14 October 2022

    Elixir node event
    Introduction to Data Management practices (preliminary) http://tess.elixir-uk.org/events/introduction-to-data-management-practices-bb1e2519-bd04-4902-b6c6-ad5c345ff122 #training #url: Introduction to Data Management Practices National course open for PhD students, postdocs, researchers and other employees within all Swedish universities. The course is geared towards life scientists wanting to take the first steps towards a more systematic and reproducible approach to analysing and managing research data. 2022-10-11 09:00:00 UTC 2022-10-14 00:00:00 UTC [] Niclas Jareborg - niclas.jareborg@scilifelab.se [] [] [] [] #trainingtraining